Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01890 ATGGATAATACTCCATGGTTGCTTCAAATGGTTTCTGCTTTGGTTCTGATTTCATTGGCCTCAGCATCTCTGGAAGTGGGTTTCTATAGGTCCACATGCCCATCTGCTGAGGCAATAGTGAAAAGCACTGTAGAAAAAGCAATTTCTGCCAACCCAGGCATAGCAGCTGGTATCATCAGAATGCATTTCCACGATTGTTTTGTGAGGGGGTGTGATGGTTCTGTGTTACTTGCTTCTACACCGGGAAACCCACCAGCTGAGCGAGACAACTTCATCAACAACCCAAGCTTACGAGGTTTCGAGGTGATTGACGAGGCCAAGACCCAGTTGGAGGCTGCATGCCCTAACACAGTATCATGTGCTGACATTTTGGCCTTCGCAGCACGAGACAGTGCTTCCAAAGTTGGTGGCATAAATTATGATGTTCCATCAGGACGCAGAGATGGTCGTGTCTCTGTTGGTGACGAAGTGCCACAGAATCTTCCTGGACCAGGTTTTACTGCTGATCAGCTCATCAATAACTTTGGACAAAAGGGTTTGTCTGTAGATGAAATGGTCACACTTTCAGGAGCACATTCAATCGGTGTGGCTAATTGTGGTGCCTTCTCGAATCGCTTATACACTTTCAGTGACACAGTGAGACAAGATCCCTCACTCGACCCTTCATATGCTGAAACGTTGAAAAACCAGTGTCCTCCACCACCCACCGTGACAGGCACCACAGTTTTTTTGGAACCTTCCACTCCTATTCGTTTGGACAGCAAATACTATGAGGGTTTGATCAACCACCGTGGCTTGTTGACGTCAGATCAGACCTTGTTCGGCTCTCAATCCACAAAGGCAATGGTTGAAAGCAATGCATACAACGGTGCAAGTTGGGCTGAGAAGTTTGCCCTAGCAATGGTGCGCATGGGTTCTATACAAGTGCTTACCGGCTACGATGGTGAGATCAGGAAGCAGTGCAGCTTCGTTAATTAG 978 0.4734 MDNTPWLLQMVSALVLISLASASLEVGFYRSTCPSAEAIVKSTVEKAISANPGIAAGIIRMHFHDCFVRGCDGSVLLASTPGNPPAERDNFINNPSLRGFEVIDEAKTQLEAACPNTVSCADILAFAARDSASKVGGINYDVPSGRRDGRVSVGDEVPQNLPGPGFTADQLINNFGQKGLSVDEMVTLSGAHSIGVANCGAFSNRLYTFSDTVRQDPSLDPSYAETLKNQCPPPPTVTGTTVFLEPSTPIRLDSKYYEGLINHRGLLTSDQTLFGSQSTKAMVESNAYNGASWAEKFALAMVRMGSIQVLTGYDGEIRKQCSFVN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01890 325 SUPERFAMILY Heme-dependent peroxidases 24 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Vian10g01890 325 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 Gene3D Peroxidase, domain 2 162 304 - -
Vian10g01890 325 CDD secretory_peroxidase 24 324 IPR033905 GO:0004601|GO:0042744
Vian10g01890 325 ProSiteProfiles Plant heme peroxidase family profile. 23 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 Gene3D - 27 325 - -
Vian10g01890 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Vian10g01890 325 FunFam Peroxidase 162 304 - -
Vian10g01890 325 PANTHER PEROXIDASE 25-RELATED 16 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 Pfam Peroxidase 40 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vian10g01890 325 FunFam Peroxidase 27 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01890 Vian-Chr10 30861178 30862273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01890 24 325 Peroxidase AT1G05250 44.590 5.49e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01890 K00430 - gmx:100792351 533.102