Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01887 ATGATGAAGGCTGTTTTGGTGATGATTATTGTTAACCTAGCTTTGGCTTTTGTCAATATATTTCTTAAGAAAGTGCTTAATGAAGGAATGGATTACTTCACCATCTTAACATACCGACAAGCTATTTCAGCCATTTTCTTAGCACCTATTGCTTGCTTCTATGAAAGGGAAAGGAAGCTGGAGGGTCACATAATATGTCTGCTTTTCATAAGTGCTCTTGTGGGGGTTACCTTTACACAATACCTGTTTCTTATGGGACTGGAATATACATCTGCAACTTTCTCATGTGCATTTCTAAATATGGTGCCTGTATTTACCTTTATCATGGCACTGCCACTCGGGATAGAGAAGGTAAACATGAGAAAAGGGAGTGCTAAGGCTAAGGTTTTGGGAACTTTTGTGTGTATTGGTGGAGCTTTGATGTTGATCCTTTACAAAGGAATGCCCTTAATCAAGCAAGAACAAGAACACATTGCAGACAAAGGCACAACAACAGCATCAGCTTCCAATATAAAGAAATGGATAATAGGTTCACTGCTTCTGATTGCAGGATGTGGCTTGTGGTCTTCATGGTTTCTCATACAAGCAAGGATTAGCAGAAAGTATCCATTTCAATACTCTAGCACAGCCCTTTTGTCCTTTTTTGCTGCCATTCAATCAGCAATTTTAACTTTGCTCATTGACAGAAGTAAGACCAAATGGATTCTCAGAGGAAAGTTAGAGATTCTCACTGTTGTATATTCTGGACTGGTTGGATCAGGGTTGTGCTATGTGGCAATGTCATGGTGTGTGAAACAAAGGGGTCCAGTTTTCACTTCAGCATTCACCCCTCTTCTGCAGATGTTTGTGGCAGTGCTTGATTTCTCTATATTACAAGAGGAGATTTATTTGGGAAGTGTTGCAGGATCAGTGTTGGTTATTTCTGGCACTTATATTTTACTTTGGGGTAAAAGTAAAGAGGAAGAACAAAATGCCATGAAGGATAGTCAAGAAGATGAAGAATGTATGAACAATTTTGAGGACAATCCAAATGTAGCCTCTAAGCTAAGGCTTAAAGGGGAACAAGGATTATCTGAAGTACAAGTGAAGCAGTTGGCCATTGAAGTAACTAGAAGCTGA 1119 0.3932 MMKAVLVMIIVNLALAFVNIFLKKVLNEGMDYFTILTYRQAISAIFLAPIACFYERERKLEGHIICLLFISALVGVTFTQYLFLMGLEYTSATFSCAFLNMVPVFTFIMALPLGIEKVNMRKGSAKAKVLGTFVCIGGALMLILYKGMPLIKQEQEHIADKGTTTASASNIKKWIIGSLLLIAGCGLWSSWFLIQARISRKYPFQYSSTALLSFFAAIQSAILTLLIDRSKTKWILRGKLEILTVVYSGLVGSGLCYVAMSWCVKQRGPVFTSAFTPLLQMFVAVLDFSILQEEIYLGSVAGSVLVISGTYILLWGKSKEEEQNAMKDSQEDEECMNNFEDNPNVASKLRLKGEQGLSEVQVKQLAIEVTRS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01887 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 235 319 - -
Vian10g01887 372 PANTHER WAT1-RELATED PROTEIN 5 326 IPR030184 GO:0016020|GO:0022857
Vian10g01887 372 Pfam EamA-like transporter family 3 143 IPR000620 GO:0016020
Vian10g01887 372 Pfam EamA-like transporter family 176 314 IPR000620 GO:0016020
Vian10g01887 372 SUPERFAMILY Multidrug resistance efflux transporter EmrE 38 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01887 Vian-Chr10 30819341 30822305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01887 3 248 Nodulin-like Gene Family AT3G30340 46.774 9.62e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01887 - - gmx:100794199 622.083