Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01885 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTTACCTTTTCCAAAAGAAGAGGTGGCCTCATCAAGAAGACAAAGGAGCTTTCTGTGCTCTGTGATGCACAGATCGGGATCATCATCTTCTCCAGCACTGGGAAGATGTGGCAATGGTGCACTGAACCCTTCAGGTGCATGCCTACTACACCTTCATTTCCTTTTCTCTCAGATCCCTTGCTTTTGAACTTTGTTCAACTTCTGAAGATGGAGCAGATCATAGAAAAGTACCAGAGAGCAACAGGAGCTCGCATTGCAGAATGTGACCATCCCCGTGAAGAATTTATCCATGACATGGCAATGCTGAGGCAAGAAACTCTCCGTCTTGAACTGGGAATTCAAAGGTATCTTGGAGAAGACATTGGTTGTTTGCAATTCGAAGATTTGACTAAACTTGAAGAAGAATTGGAGAATTCTGTGGCAAAGGTTCGAAATCGTCAGAATGAACTCTTACAACAACAAATGGAGAATCTGAGAAGGAAGGAACACAGAGCAGTGTTGGAGTTTGAGAAGGCTACATTGGAAGCAAGCAAACCAATGGATATGATGGATCAGTTTCCATTCTTTGAAGAACAATCTGCTGGTAGCATCCTTCAACTTGCTTCTCCTGTGCTTCCACACTTTCACCCTTATCTTCAGCTTGCACAACCCAATATCAAGCCTCAGTGA 723 0.4385 MGRGKIEIKRIENTTTRQVTFSKRRGGLIKKTKELSVLCDAQIGIIIFSSTGKMWQWCTEPFRCMPTTPSFPFLSDPLLLNFVQLLKMEQIIEKYQRATGARIAECDHPREEFIHDMAMLRQETLRLELGIQRYLGEDIGCLQFEDLTKLEEELENSVAKVRNRQNELLQQQMENLRRKEHRAVLEFEKATLEASKPMDMMDQFPFFEEQSAGSILQLASPVLPHFHPYLQLAQPNIKPQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01885 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian10g01885 240 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Vian10g01885 240 CDD MADS_MEF2_like 2 102 IPR033896 GO:0000977|GO:0045944
Vian10g01885 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian10g01885 240 ProSiteProfiles K-box domain profile. 110 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian10g01885 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Vian10g01885 240 Coils Coil 144 186 - -
Vian10g01885 240 Pfam K-box region 110 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian10g01885 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian10g01885 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian10g01885 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian10g01885 240 Gene3D - 14 115 IPR036879 GO:0003677|GO:0046983
Vian10g01885 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01885 Vian-Chr10 30804930 30808572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01885 1 238 MADS-box Gene Family AT5G23260 40.959 7.31e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian10g01885 K-box 9.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01885 - - gmx:100783876 318.546