Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01883 ATGAAGCTATCGTTTTCCGTCCCCTCATCGAAATCCCAATCGAAGCCCAAACCCGTCAATACCTTCGACGACACTTCCACCGCCCAAAACGACGCTGACGGATCTAAACACCTCATCACCGAATTCGATCCTTCCAAACCCGGTCCCTCCCTCGCCCCCAAAATCCTAATTCCGCCAGTCCAAAACGAATGGAAACCCTTTAAGAAGATGAAGAACCTCCACCTCCCCACCGCCGACCCTGAATCCGAACCCCTTACATTCGAAGTCCACGCCGTCGACGGCCAACCCGACTCCGACGTCTCCTATGGCCTCAACCTCCGCACCGACAAAAAGACTGAGCAAAACAACGGCAGCGCACTTCCGCCGCCGCCGCGCCGCGTTCCGGTGGAGGGCACGATGCTGCAGAAGCTGAAGGACGACATGGAGAGGCTACCGGACGATCAGGGGTTCGACGAATTCAAGGATGTTCCAGTCGAGGGTTTTGGCGCCGCGCTGCTGGCCGGGTACGGGTGGAAGGAAGGGATGGGGATTGGAAAGAACGCGAAGGACGACGTGAAGGTTAGGGAGATCAAGCGGAGAACTGCCAAGGAAGGATTGGGTTTTGTTGGTGATGCTCCTGCTGCGCTGGTTAGGAGTAGCAATGACAAGGACAAGAAAGACAAAAAGCAGAATGAGAAGAAGGAGAAAGTTGTTAGGATTGTTGGGGGAAGAGATGCTGGGAGAAAGGGTACTGTTGTGTCTAGTATTGGTGATGATTATCTTGTTTTGGAGCTATCCAGAAGTGAAGAGAAGGTGAAAGTGAAGGTGGGGGATGTTGCTGAATTGGGTTCTAAGGATGAAGAGAGGTATTTGAGGAAATTGAAGGAGTCGAAGATTCAGCGTGAGGATAGAGGGCCAAAAAGGAAGCGCGACAGGGATGAGGTGGAGAATAGAGTGGATGTTAGTCAGAGAGAGGAGAGGAAAGGGGTGGGTCGTAGGGATGTGGTTGAGGAGAAGAGAGTGGATGGTGGTAGGAGAGAAGAGAGGAGAGTGGTGGATCAGAGGAAGGTTTCTTGGCTTACTAGTCACATTCGGGTGAGGGTGATTAGCAGGGATTTGAAAGGAGGGCGGTTGTATTTGAAGAAGGGGGAGATTTTGGATGTCGTTGGACCTACCACATGTGATGTATCTATGGATGAGAGCAGGGAGATTGTTCAAGGGGTGTCCCAAGATTTTCTGGAGACGGCAATTCCGAAACGAGGGGGACCTGTGCTTGTGTTGGCTGGTAAATACAAGGGTGTATTTGGGAGTCTGGTGGAGAGGGATTTGGACCGGGAAATGGCCATTGTTAGGGATGCTGATACCCATGAGCTGCTAGATGTGAAGCTTGAACAAATTGCGGAGTATATAGGGGACCCAAGCTTGTTGGGACATTGA 1416 0.5184 MKLSFSVPSSKSQSKPKPVNTFDDTSTAQNDADGSKHLITEFDPSKPGPSLAPKILIPPVQNEWKPFKKMKNLHLPTADPESEPLTFEVHAVDGQPDSDVSYGLNLRTDKKTEQNNGSALPPPPRRVPVEGTMLQKLKDDMERLPDDQGFDEFKDVPVEGFGAALLAGYGWKEGMGIGKNAKDDVKVREIKRRTAKEGLGFVGDAPAALVRSSNDKDKKDKKQNEKKEKVVRIVGGRDAGRKGTVVSSIGDDYLVLELSRSEEKVKVKVGDVAELGSKDEERYLRKLKESKIQREDRGPKRKRDRDEVENRVDVSQREERKGVGRRDVVEEKRVDGGRREERRVVDQRKVSWLTSHIRVRVISRDLKGGRLYLKKGEILDVVGPTTCDVSMDESREIVQGVSQDFLETAIPKRGGPVLVLAGKYKGVFGSLVERDLDREMAIVRDADTHELLDVKLEQIAEYIGDPSLLGH 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01883 471 MobiDBLite consensus disorder prediction 211 234 - -
Vian10g01883 471 Gene3D - 356 410 - -
Vian10g01883 471 MobiDBLite consensus disorder prediction 290 332 - -
Vian10g01883 471 MobiDBLite consensus disorder prediction 109 129 - -
Vian10g01883 471 PANTHER G PATCH AND KOW-CONTAINING 1 467 IPR045166 GO:0000398
Vian10g01883 471 SMART kow_9 410 437 IPR005824 -
Vian10g01883 471 SMART kow_9 224 251 IPR005824 -
Vian10g01883 471 SMART G-patch_5 156 202 IPR000467 GO:0003676
Vian10g01883 471 MobiDBLite consensus disorder prediction 1 34 - -
Vian10g01883 471 MobiDBLite consensus disorder prediction 1 55 - -
Vian10g01883 471 ProSiteProfiles G-patch domain profile. 158 204 IPR000467 GO:0003676
Vian10g01883 471 Pfam G-patch domain 145 201 IPR026822 -
Vian10g01883 471 MobiDBLite consensus disorder prediction 209 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01883 Vian-Chr10 30788504 30789919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01883 296 444 C2H2 Transcription Factor Family AT1G55460 30.872 3.97e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01883 K13101 - gmx:100784983 649.432