Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01881 ATGACTAGTAAAAGTTCAATTACTCAGCCAACAACCAGACATGGAACCAACAAACCGACCAAATACGATTTAGCTGATCTAGAATGGACCAAAAGGATTCCAGAGTGTCCAACATACTACCCATCAGAGCATGAGTTTGACCATCCTTTAGTTTTTCTGCAGAAAATAGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCTAACCCAGCTGCTTTTGTCTTAATGGAAGAGAAAAAGGATTTCAAGTTTGAAACAAACTTACAGCCTCTTCGTCTGTCTAAATGGAATGAGAAGGAAACAATAACCTTTTCTATGAGTGGCAGAAAATATACATATCATGAATTTGAGGTTCTTGCAAATAAGACATTTTTCAGTAGATTTCACTGTTCTGGAGGTCTTTCTTCTTCATGTGTGGAAAAGGAGTTCTGGCATGAGATGATGCATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAAGCTTGGAATAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCATCCTTACGTTTAGTTGACAAGGAAATTCCCGGAATAACTGATCCTATGCTTTACATTGGAATGTTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATCATCACTCAGGTGCAAGTAAAACTTGGTATGGAGTGCCTGGCTATGCAACCCCTCATTTTGAAAAGACCGTCTTAAAACACGTGTATTGCAATAAGATCTTAACAAAACATGGAGAGGATGGAGCTTTCAGGTTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTTATGTTACAACATGATGTGGATGTTTACAAGGCTGTACAGAAACCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAATTTTGCCACTGATGATTGGTTTCCATTTGGGGCAGCAGCCAGCAGGCGTTATGCATTTCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGTTAGTTTACAAGTCCTCCTCAAGAGTCAGAAGTTCCAAGAACAAGCCTGAAGACACAGCACCTTATAAAGCTATAGTGCAGCCTTTCTTGCATCTTATGCAATTTTATATGATATCCCTTTTGCGACTGAAGAGTTCAAGAAACTTGCAAAGTTATTCAAATACATCAGGTTTGCTGATATGCCGCATATGCCACAGGGATTGTTATGTGGCTTACCTGCTATGCAAGTACTGCTTTTCTCATCCAATTTGTCTTTTCCATGACATTGCACCACACACTTGTATATGTGGAAGATTTTATTCTGTTTTCATAAGGAATGACATTTTGGAACTGGAAGAAGCTGCCAAAAGTTTTCAACAGAAAAAAAAATGCTGCACTGAATCATTCTCTGTATCAAGTTTACTCTCCTGTAACAGAAATGAATGCATCAAACATCTTGAGATACCTGCTGTTGTGCCACCGCTTCCGTCACCTGATTCATCCTTTTCAGCGGCTCCACCGGCCTTGGGTCTTCCCGTCGTCCACCTATCGTGTAGATCTGTGGGTAGTGGTTTTGTGAACACTGACTTTGATAATTTGCAGCTGAACATACAGAAAATGGCAATTGCACCTGCACAAATTCCTACTAGCTTTGGCCATGAGTTGAGGGCATGTCTTCGTTGCCGCCTTGTCAAAACCTATGATCAGTTCCGAGAGTCAGGCTGTGAGAACTGCCAGTTCTTTAAGATGGAAGAAGATCATGAGCGTGTTGTTGAATGCACTACTCCTAATTTTAATGGGATCATTTCTGTTATGGATCCCTCTCGCAGCTGGGCTGCCCGATGGTTGCGCATTGGAAAATTCGCTCCTGGTGTTTATACTCTTGCGGTCTCAGAGGCACTCCCAGAAGAGATGCAGGCTATATGCGAGGACGAGCGTGTGCAGTATGTCCCTCCCAAACGTCTGTGA 2064 0.4123 MTSKSSITQPTTRHGTNKPTKYDLADLEWTKRIPECPTYYPSEHEFDHPLVFLQKIAPEASKYGICKIVSPIAASNPAAFVLMEEKKDFKFETNLQPLRLSKWNEKETITFSMSGRKYTYHEFEVLANKTFFSRFHCSGGLSSSCVEKEFWHEMMHGEKGTVEYGVNVEGSAFSCDPDDKLGISKWNLKNFSRLLQSSLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGASKTWYGVPGYATPHFEKTVLKHVYCNKILTKHGEDGAFRFLAQKTTMFPPNVMLQHDVDVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFATDDWFPFGAAASRRYAFLRMMPLIPYEELLCKEAMLVYKSSSRVRSSKNKPEDTAPYKAIVQPFLHLMQFYMISLLRLKSSRNLQSYSNTSGLLICRICHRDCYVAYLLCKYCFSHPICLFHDIAPHTCICGRFYSVFIRNDILELEEAAKSFQQKKKCCTESFSVSSLLSCNRNECIKHLEIPAVVPPLPSPDSSFSAAPPALGLPVVHLSCRSVGSGFVNTDFDNLQLNIQKMAIAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCQFFKMEEDHERVVECTTPNFNGIISVMDPSRSWAARWLRIGKFAPGVYTLAVSEALPEEMQAICEDERVQYVPPKRL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01881 687 SMART cupin_9 183 353 IPR003347 -
Vian10g01881 687 SMART Spt4_2 587 663 IPR022800 -
Vian10g01881 687 MobiDBLite consensus disorder prediction 1 20 - -
Vian10g01881 687 ProSiteProfiles JmjC domain profile. 183 353 IPR003347 -
Vian10g01881 687 Gene3D Cupin 36 399 - -
Vian10g01881 687 CDD Spt4 585 681 IPR022800 -
Vian10g01881 687 Pfam Spt4/RpoE2 zinc finger 587 663 IPR022800 -
Vian10g01881 687 SUPERFAMILY Clavaminate synthase-like 194 369 - -
Vian10g01881 687 Pfam JmjC domain, hydroxylase 213 336 IPR003347 -
Vian10g01881 687 SMART JmjN_1 35 76 IPR003349 -
Vian10g01881 687 Gene3D - 572 677 IPR038510 -
Vian10g01881 687 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 496 - -
Vian10g01881 687 FunFam Transcription elongation factor SPT4 homolog 574 677 - -
Vian10g01881 687 MobiDBLite consensus disorder prediction 1 18 - -
Vian10g01881 687 FunFam Lysine-specific demethylase isoform A 31 380 - -
Vian10g01881 687 Pfam jmjN domain 37 69 IPR003349 -
Vian10g01881 687 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Vian10g01881 687 SUPERFAMILY RNA polymerase subunits 583 662 IPR029040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01881 Vian-Chr10 30771799 30778861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01881 33 491 JUMONJI Transcription Factor Family AT2G34880 31.439 6.73e-58 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian10g01881 JmjC 6.5e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01881 - - vum:124843430 929.858