Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01877 ATGACTCCTCGCGTCGACGATTTCGGCAATCTCTCATCCACCGATGATGACGACGATGACGACGGCTTCAAGGACGATATGGCCGCGCTCTCCCGAGCCTGCAGGATTGTTGTCCCAGGCGCCAAAGATAATTCTGCCGCCGAAGACGGAGTTTCGTCGGAGGACCCGCCCATTGACGCCAGCACCGCCACTGTTTCGGTTGCCACCGACTCGGACTCAGACGGCCAGGACGACCTTGAATGTCTCAAGAGAGTGCAGAGCCTCTACCAGCCTCTGTCCGTTCTTCCGCCGCTTGCGCCGTTGGCCTTGTCTGACGATGACGACGACTTGGATGACCTCGAGACGGTGCGCGCCATCATGAGAAGGTTTGGCGACTACAACGAAGGTTTGCGTGAAGATGGAAAGAAAGTGTTGGTTGAGGAGGATCAGACCTCCAGCATGGGCTGTGAGGGTGACGTTGCTAATGGCTCAACACATAACGAATCAGATGGTGGTAAATTATATCCTATTTCTCAAGATCCTAAAGAGGCTGCCACAGAGGAGTTGATTGAAAACATTGAAATGCAGCTTAGTGAATTTGTTGAGAGTTCTGAACCCGATGACGGGGAGTCATCTAGATTACCACAGAAAAGATTGAGCTTTCCTCCTGTTGTTCAGTGCTTTATTGATGCCATTAAGAAAAATAGGGATTTGCAGAGATTTCTTAGAGGTAAGTTAATTGAGCTTGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAATAGAATCAAAATTCTTAAGGACTTCCAGGCTTCGTGCAATAGAAGAACAGGGAATGTGTTATCACTGAAAAAAGATCCACGTGTTCAATTAATATCTGCAAAAAAGTCTTCTGTTCCAAAGAAATATAAGAAGCAAAAAAGGGTACCTGCAATGTGTTATGGCCCAGAAGAAAATTCTCATGCCGTTAATTATAGAATGGTATTGGAAAGATTTCCACTTTCATTAGATCGGAAAAAATGGTCCAAGGTAGAAAGGGAAAATCTTTTGAAGGGAATTAAGCAACAGTTCCAAGAAATGGTGCTTCAACTCTCACTTTCAATTGATAGAACTAGTTCAGAGGAATTGCTTCGGGAGGCAGATGACATGGATAATATAATTGCATCTGTTAAAGATCTTGAAGTCACACCAGAGAGGATTAGAAAATTTTTACCTAAAGTTAATTGGGATATGATAGCTTCCATGTATGTTGGTGGCCGTACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTATGAAGATCCTTTGATCAACCAAGGTGCGTGGACTAAGGAAGAGGACAGGTCCCTTTTACTTATTGTACAAGATACAGGTATCAGGAATTGGTTCGAAATTGCTGCATCATTGGGCACAAGCAGGACTCCATTTCAATGCTTGTCGCGATTCCAAAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTCTATTCTGCTGTGACGTATTTTGGTGATGGCAATTGGCAGTATGTGGCTTCTGTTTTAGAACGGCGGACAGGAACCCAATGCTCAAATAGATGGAAAAAATCCCTTTGTCCTGAAAAGAAAGGGAGCTTTACACAAGAGGAGGATATGCGCTTAACAGTAGCAGTCATGCTTTTTGGACGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAGGAGGATTTAAGACTAGAAGCTGCAATTGCCAAGCATGGATATTGTTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCACAGTGCCGAAAGAGATGGAAGGTGTTATGTCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAAAGGTCTATCATTAGTTGTAACTTCGTTGATCGAGAATCTGAACGGCCAACCATTACACTTGATGACTTTATGCCTTTAATTGCGTTAGCTCCAAAATCCGATATTGGTGCTTCAAAACTTCCCAAGAAGCGCAAGTCAAGCAATGTTTCCAAGAAAACAAGCTCTAAGAAACGTGCAAAAAGAACTCGACGTTGTGCTAAAGAAGTACAAGATACAGAAGTATACAACGATGATGAGTTCTACGCAGAATCTGCATGCATCAATCTTCCCAAGAAGAACACGAGATCCAAAAGGCACGCAAAAAGAAGTAAAATTTGTCCCCAGGAATTAGTGGATATATCTTGTAGTGACAAGGTCGAGACTTGCATTGAGGGTTCAGAAAACCAATCTACCTGTATTGCGAATTCGGAAAATCAAGATTGGGACAGCATGACCCTTTCGTCTTTTATACGCAACAAATCAAATGAGATATTATCTAGATTTACCAAAAAATTGAGTCAGACTTCCTTCTCCTCTAGGATTACAGATGTTCCTGAGCAGGTTGAAAGTCAAAATCCATCTCATGACCAAAGCGGCTCGTCTGAGTCATGTGATACTGTTGGAACTATAAATTTGTTTGTGCCGCCGAATATTGTTTCTGATGGACGAGTTAGAAACCGAGAGGATACAAATGCTTTGACTGGTGATGATAACGACGACCATATGACCCTTGCATCCTTTCTAGGAAACAAACCAAAGAAAAAGTGTCAACCTAAAGGACATCACGTATGCTCTTCCAAATTGAAAACAGGATCTGCATTACTAAATGAAGAACATTGTGCAAGCAAGCCAACCATCATATCTGATGACAGTGGGTCAATGTCATATCATGTTGAAGCGATGGAGACTGTTTTACATGCTTGTGTTGATAAACCAATGGATACCATTGTGGAAGAAAAGGATGATGAGCTTTTTACTTCCCACGTGCAAAACCGGCCAAGGAGGGAACGAAAACGTCCCAGTAGATTTTTGTAG 2952 0.4282 MTPRVDDFGNLSSTDDDDDDDGFKDDMAALSRACRIVVPGAKDNSAAEDGVSSEDPPIDASTATVSVATDSDSDGQDDLECLKRVQSLYQPLSVLPPLAPLALSDDDDDLDDLETVRAIMRRFGDYNEGLREDGKKVLVEEDQTSSMGCEGDVANGSTHNESDGGKLYPISQDPKEAATEELIENIEMQLSEFVESSEPDDGESSRLPQKRLSFPPVVQCFIDAIKKNRDLQRFLRGKLIELEAKIEENKKIRNRIKILKDFQASCNRRTGNVLSLKKDPRVQLISAKKSSVPKKYKKQKRVPAMCYGPEENSHAVNYRMVLERFPLSLDRKKWSKVERENLLKGIKQQFQEMVLQLSLSIDRTSSEELLREADDMDNIIASVKDLEVTPERIRKFLPKVNWDMIASMYVGGRTGAECESRWLNYEDPLINQGAWTKEEDRSLLLIVQDTGIRNWFEIAASLGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDAQLYSAVTYFGDGNWQYVASVLERRTGTQCSNRWKKSLCPEKKGSFTQEEDMRLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLEAAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIISCNFVDRESERPTITLDDFMPLIALAPKSDIGASKLPKKRKSSNVSKKTSSKKRAKRTRRCAKEVQDTEVYNDDEFYAESACINLPKKNTRSKRHAKRSKICPQELVDISCSDKVETCIEGSENQSTCIANSENQDWDSMTLSSFIRNKSNEILSRFTKKLSQTSFSSRITDVPEQVESQNPSHDQSGSSESCDTVGTINLFVPPNIVSDGRVRNREDTNALTGDDNDDHMTLASFLGNKPKKKCQPKGHHVCSSKLKTGSALLNEEHCASKPTIISDDSGSMSYHVEAMETVLHACVDKPMDTIVEEKDDELFTSHVQNRPRRERKRPSRFL 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01877 983 ProSiteProfiles Myb-like domain profile. 480 531 IPR001005 -
Vian10g01877 983 CDD SANT 434 479 IPR001005 -
Vian10g01877 983 ProSiteProfiles Myb-like domain profile. 326 426 IPR001005 -
Vian10g01877 983 MobiDBLite consensus disorder prediction 683 710 - -
Vian10g01877 983 CDD SANT 590 631 IPR001005 -
Vian10g01877 983 MobiDBLite consensus disorder prediction 690 709 - -
Vian10g01877 983 Pfam Myb-like DNA-binding domain 589 630 IPR001005 -
Vian10g01877 983 Pfam Myb-like DNA-binding domain 536 579 IPR001005 -
Vian10g01877 983 Pfam Myb-like DNA-binding domain 331 425 IPR001005 -
Vian10g01877 983 Gene3D - 429 479 - -
Vian10g01877 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 427 479 IPR017930 -
Vian10g01877 983 SMART sant 484 533 IPR001005 -
Vian10g01877 983 SMART sant 330 428 IPR001005 -
Vian10g01877 983 SMART sant 535 583 IPR001005 -
Vian10g01877 983 SMART sant 586 634 IPR001005 -
Vian10g01877 983 SMART sant 431 481 IPR001005 -
Vian10g01877 983 CDD SANT 487 531 IPR001005 -
Vian10g01877 983 MobiDBLite consensus disorder prediction 41 78 - -
Vian10g01877 983 SUPERFAMILY Homeodomain-like 561 633 IPR009057 -
Vian10g01877 983 CDD SANT 389 425 IPR001005 -
Vian10g01877 983 CDD SANT 538 581 IPR001005 -
Vian10g01877 983 Gene3D - 535 587 - -
Vian10g01877 983 ProSiteProfiles Myb-like domain profile. 535 581 IPR001005 -
Vian10g01877 983 SUPERFAMILY Homeodomain-like 408 476 IPR009057 -
Vian10g01877 983 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 15 921 - -
Vian10g01877 983 MobiDBLite consensus disorder prediction 148 165 - -
Vian10g01877 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 582 636 IPR017930 -
Vian10g01877 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 536 581 IPR017930 -
Vian10g01877 983 Pfam Myb-like DNA-binding domain 435 496 - -
Vian10g01877 983 Gene3D - 589 635 - -
Vian10g01877 983 ProSiteProfiles SANT domain profile. 590 633 IPR017884 -
Vian10g01877 983 ProSiteProfiles Myb-like domain profile. 582 632 IPR001005 -
Vian10g01877 983 ProSiteProfiles Myb-like domain profile. 427 479 IPR001005 -
Vian10g01877 983 MobiDBLite consensus disorder prediction 57 72 - -
Vian10g01877 983 MobiDBLite consensus disorder prediction 142 167 - -
Vian10g01877 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 480 535 IPR017930 -
Vian10g01877 983 Gene3D - 330 428 - -
Vian10g01877 983 Gene3D - 486 534 - -
Vian10g01877 983 MobiDBLite consensus disorder prediction 1 25 - -
Vian10g01877 983 MobiDBLite consensus disorder prediction 818 843 - -
Vian10g01877 983 SUPERFAMILY Homeodomain-like 483 577 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01877 Vian-Chr10 30748934 30755568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01877 200 725 MYB-Related Transcription Factor Family AT3G18100 48.983 8.79e-170 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian10g01877 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01877 K09422 - gmx:778073 1289.63