Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01871 ATGTGGGAGCAAATTCTCACCAATTGGTTTGCATGTTTGCAAATGATAAAGGCACTGATGATTCTTTTGAATGCACAGGCTGATCAAGTCAATTTTGTAGTGGGGTCCCATGTTTGGGTAGAGGACACTGAGTTAGCTTGGATAGATGGAGAAATCCAGGAATCTAACAAAGACGAGGTCACGATCCTCTTTGAATCGGACACGAGGGTTGTGAGAAAATCCGCTAACATGTATCCCAAAGATCCAGAATTCCCACCTGCTGGTGTGGAAGATATGACAAGACTGGCATATCTGCATGAACCAGGACTTCTTCAGAATTTGCAAATTCGATATTCCATAAATGAGATTTATACATACACGGGAAGTATATTGATAGCTGTAAACCCTTTTCAAAAGTTACCTCATTTGACTGGAACTAGTACCATGGAAAAGTATAAATGTGCGGCCTTTGGTGAGCAGAGCCCGCACCCTTTTGCTATTGCAAGTTCTGCATATAGCAAGATGATAAACGAAAAAAGAAACCAATCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGAAAAACTGAAAGTACAAAGATGCTTATGCAGTATCTTGCTTTTATTGGAGGGAGAGCAGAAACTGAAGGACGGTCTGTGGAGCAACAAGTTCTCGAGTCCAATCCAGTTTTAGAAGCATTTGGCAACGCAAAGACAGAATCTGGTAAGTATAAATTGGGAGATCCAAGAAAATTCCATTACCTTAATCAATCAAATAGCATTGAGCTGGATGGGTTGGATGATTCTAAGGAGTACTTTGCAACTAAGAGAGCTATGGAGGTTGTTGGGATCAGCTCTGAGGAGCAGGATGCTATATTTCGAGTAGTAGCTGCAATACTTCATTTAGGAAACATTGATTTTGTTAAGGGAGTGGAAGAGGTGTTTGATTCCTGTCAGCCCAAGGATGAAAAATCCTATTTCCACCTAAAAACCGCAGCTGAGCTTTTGATGTGTGATGAGAAGTCCCTTGAAGAGTCTTTCTGCAAAAGTATTATAGTGACTCGTGGCGACACCATAACAAAATCACTTGATCCAAATTCTGCAGCTCTCAGAAGAGATTCATTAGCTAAAATAATTTATTCAAGGCTTTTTGACTGGATTATGTGCAAGATAAACGACACTATTGGGCAAGATCCAAAGTCAAATAGTTTGATTGGAGTTCTAGATATATATGGATTTGAGAGTTTCAAAACCAACAGCTTTGAGCAATTCTGTATCAATTTGGCAAATGAGAAATTACAGCAACATTTCAACCAGCATATCTTCAAAATGGAGCAAGAGGAATATAAAAAGGAAGAGATTGATTGGAGTTATATTGAGTTCGTGGATAATCAAGATGTTATTGATCTCATAGAGAAGAAACCAGTTGGCATTATTTCTCTCCTGGATGAGGCCTGTATGTTTCCAAGATCAACGCACGAAACATTTGCTGAAAAGCTGTATCAAACCTTCAAAGACAACAAACGCTTCAACAAGCCAAAGTTCTCTCGCACTGACTTCACCATTAAGCATTATGCTGGTGATGTCACTTATCAAACTGATCTTTTCCTTGATAAAAATAAAGACTACGCTATTCCAGAGCATGCTGACATACTCAATGCCTCCAAGTGCTCCTTTGTTTCAGGGTTGTTCCCACCTTTACCTGAGAATGCTACAAAATCGAAAAAGTTCTCTTCAGTTGCCACTCAGTTTAAGCTACAACTGCAATCTTTGCTTGAAACACTAAATGCTACCGAGCCACACTACATTCGTTGTGTAAAGCCAAATCATCTTCTGAAGCCAGGGATATTCGGGAACAAAATTGTGTTGCAGCAGCTTCGATGTGGAGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCTACTAGAAAGAAATTTGATGAATTTGTTCAGAGGTTTAGCATCCTGGAACCTGAGGTTCTGAAAGAATGCCCTAATAGGAAGACTGCTTGCAAGAGGCTTCTAGATAGAGTCAATCTTAAAGATTATCAGATTGGAAAGACAAAAGTGTTTCTGAGAGCAAGTCAAATAGCAGAACTAGATGCATGTCGTGCAGAGGTCCTGGGAAGATCTGCAAGTGTTATTCAGAGAAAACTCCGCACGTTTCTCTGTCAGAAACAGTTCATCTCATTGCTGTTGTCTGCCATAGAACTTCAAAGGGTTGCGAAAGGACAACTTGCACGACATCAGTATGAATGCATGAGGAGAGAAGCAGCTTCTTTGAAAATTCAGAAAGATTTCCTAATGCATGTTTCCAGAGAAGCTTACAAAAGTATTTATGCCTCAGCTATTTATATTCAAATTTGTTTGAGAGGGATGGTTGCTAGAAATGACCTTAGATTCAGAAAACGATCACAAGCTGCAGCTGTTATACAGGCTGCCAAAGAAACAAAGGCACTTGAAGCTGCAAAAAATAATCTGGCAAAGAAAGTGAAAGATTTAATTTCGTTTCTAGAGGAAGAGAAGACAATGAGGGAAGCTACGACACAAGAAAATGAAAAACTACAATATGCTTTGCAAGAGAAGGAGGTACAGTTGGAAGCCAAAACACAAGAAATTGAAAACCTAAAACATGTTTTGCAAGCGAAGGAGGTTCAGTTCGAAGAAATCAAGGAAGCCAAGAAACAGGAAACTGAAAAACTGCGGCTTGATTTGCAAGAGATGGAGTTTCAGTTCCAAGAAGCTAAGGCAGTGCTCACTGAGGAACTAGAGACTGCCATGAAAGTAGTTGAGCAACCTCAAACTGTGCAGGAACTGGTGAATTCATTCGAAAAGAAAATTGGAAGAGAGTTACCTACAAATGTTACTAACGATGAGTTGAATAACCTTACTTTAGAAAATAAACGTATTAAGGAACGCATTAAATTGTTGGAAAAGAAAACTACTTTACAAGAGTTTCCTGTTAACGATGAGTTTATCTATAAGCTTATTTCAGAAAATGAACACCTTAAGGAACAAATTAGTTCATTGGAAAAGAAAATTACACCGGATTTTCTTGTCAATGCTGCTGACGCAATCAATAAATTTGCATCGGAAAATGAACATTTGAAGGTATAA 3099 0.3904 MWEQILTNWFACLQMIKALMILLNAQADQVNFVVGSHVWVEDTELAWIDGEIQESNKDEVTILFESDTRVVRKSANMYPKDPEFPPAGVEDMTRLAYLHEPGLLQNLQIRYSINEIYTYTGSILIAVNPFQKLPHLTGTSTMEKYKCAAFGEQSPHPFAIASSAYSKMINEKRNQSILVSGESGAGKTESTKMLMQYLAFIGGRAETEGRSVEQQVLESNPVLEAFGNAKTESGKYKLGDPRKFHYLNQSNSIELDGLDDSKEYFATKRAMEVVGISSEEQDAIFRVVAAILHLGNIDFVKGVEEVFDSCQPKDEKSYFHLKTAAELLMCDEKSLEESFCKSIIVTRGDTITKSLDPNSAALRRDSLAKIIYSRLFDWIMCKINDTIGQDPKSNSLIGVLDIYGFESFKTNSFEQFCINLANEKLQQHFNQHIFKMEQEEYKKEEIDWSYIEFVDNQDVIDLIEKKPVGIISLLDEACMFPRSTHETFAEKLYQTFKDNKRFNKPKFSRTDFTIKHYAGDVTYQTDLFLDKNKDYAIPEHADILNASKCSFVSGLFPPLPENATKSKKFSSVATQFKLQLQSLLETLNATEPHYIRCVKPNHLLKPGIFGNKIVLQQLRCGGVMEAIRISCAGYPTRKKFDEFVQRFSILEPEVLKECPNRKTACKRLLDRVNLKDYQIGKTKVFLRASQIAELDACRAEVLGRSASVIQRKLRTFLCQKQFISLLLSAIELQRVAKGQLARHQYECMRREAASLKIQKDFLMHVSREAYKSIYASAIYIQICLRGMVARNDLRFRKRSQAAAVIQAAKETKALEAAKNNLAKKVKDLISFLEEEKTMREATTQENEKLQYALQEKEVQLEAKTQEIENLKHVLQAKEVQFEEIKEAKKQETEKLRLDLQEMEFQFQEAKAVLTEELETAMKVVEQPQTVQELVNSFEKKIGRELPTNVTNDELNNLTLENKRIKERIKLLEKKTTLQEFPVNDEFIYKLISENEHLKEQISSLEKKITPDFLVNAADAINKFASENEHLKV 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01871 1032 SMART iq_5 749 771 IPR000048 GO:0005515
Vian10g01871 1032 SMART iq_5 701 723 IPR000048 GO:0005515
Vian10g01871 1032 SMART iq_5 772 794 IPR000048 GO:0005515
Vian10g01871 1032 SMART iq_5 724 746 IPR000048 GO:0005515
Vian10g01871 1032 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 33 82 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vian10g01871 1032 Gene3D - 753 804 - -
Vian10g01871 1032 Gene3D - 702 752 - -
Vian10g01871 1032 ProSiteProfiles IQ motif profile. 775 802 IPR000048 GO:0005515
Vian10g01871 1032 Gene3D Kinesin motor domain 37 235 IPR036961 -
Vian10g01871 1032 Gene3D Kinesin motor domain 561 633 IPR036961 -
Vian10g01871 1032 Pfam Myosin N-terminal SH3-like domain 35 73 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vian10g01871 1032 Coils Coil 954 974 - -
Vian10g01871 1032 ProSiteProfiles IQ motif profile. 728 754 IPR000048 GO:0005515
Vian10g01871 1032 Gene3D Myosin VI head, motor domain, U50 subdomain 277 412 - -
Vian10g01871 1032 Coils Coil 987 1007 - -
Vian10g01871 1032 PANTHER MYOSIN 235 995 - -
Vian10g01871 1032 Coils Coil 839 905 - -
Vian10g01871 1032 SMART MYSc_2a 81 700 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01871 1032 ProSiteProfiles Myosin motor domain profile. 87 699 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01871 1032 Gene3D - 634 700 - -
Vian10g01871 1032 ProSiteProfiles IQ motif profile. 750 776 IPR000048 GO:0005515
Vian10g01871 1032 PRINTS Myosin heavy chain signature 396 424 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01871 1032 PRINTS Myosin heavy chain signature 117 136 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01871 1032 PRINTS Myosin heavy chain signature 449 477 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01871 1032 Pfam Myosin head (motor domain) 234 687 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01871 1032 Pfam Myosin head (motor domain) 89 231 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vian10g01871 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 753 IPR027417 -
Vian10g01871 1032 Gene3D - 413 555 - -
Vian10g01871 1032 FunFam unconventional myosin-Va 752 800 - -
Vian10g01871 1032 FunFam Class V myosin 406 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01871 Vian-Chr10 30698873 30710324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01871 22 980 Myosins gene family AT5G43900 55.317 0.0 1134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01871 K10357 - gmx:100788123 1327