LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian10g01870	ATGATAAAGGCACTGATTATTCTTTTGAATGCACAGGCTGGTCAACTGAATCTTGTAGTGGGGTCCCATGTTTGGGTAGAGGACCCTGAGTTAGCTTGGATAGATGGAGAAATCCAGGAATCTAAAAAGGACGAGGTCACGATTCTCTTTGAATCGGGCACGAGGGTTGTGAGCAAATCCGCTAACATGTATCCCAAAGATCCAGAATTCCCACCTGCTGGTGTGGAAGATATGACAAGACTGGCATATCTGCATGAACCAGGAGTTCTTCAGAATTTGCATATTCGATATTCCCTAAATGATATCTATACTTACACAGGAAATATATTGATAGCTGTGAACCCTTTTCAAAGGTTACCTCATTTGACTGAAACTAGTACCATGGCAAAGTATAAAGCTGCGGCTTTTGGTGAGCAGAGCCCGCATCCTTTTGCAATTGCAAGTTCTGCATATAGAAAGATGATAAACGAAGAAAAAAGCCAATCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGCAAGACAGAGAGTACAAAGATGCTTATGCATTATCTTGCTTTTTTGGGAGGGAGAGCAGCAACTGAAGGACGGTCTGTGGAGCAACAAGTTCTCGAGTCCAATCCAGTTTTAGAAGCATTTGGCAATGCAAAGACAGTTAGGAATAATAATTCTAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAACGATCCCGTGTTTGTCAAGTTTCTGATCCTGAGAGAAACTATCATTGCTTTTATATGCTGTGTGCTGCACCAAAAGAGGAATCTGGTAAGTACAAATTGGGAGATCCAAGAAAATTCCATTACCTTAATCAATCAAATTGCATTGAGTTGGATGGGTTGGATGATTCTAAGGAGTACCTTGCAACTAGGAGAGCTATGGAGGTTGTTGGGATCAGCGGAGATGAGCAGGATGCTATATTTCGAATAGTAGCTGCAGTACTTCATTTAGGAAACATTGAGTTTATTAAGGGTTCGGAAGATGAGTTGGATTCCTCTCAGCCCAAGGATGAAAAATCCATTTACCACCTAAAAACAGCAGCCGAGCTTTTGATGTGTGACGAGAAGTCCCTTGAAGACTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCACTTGATCCAACTGCTGCAGCCCTCAGCAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGTGCAAGATAAACAACACTATTGGGCAAGATCCAGATTCAACTAAATTGATTGGAGTTCTTGATATATATGGATTTGAGAGTTTCAAAACCAACAGCTTTGAGCAATTTTGTATCAATTTAACAAATGAGAAATTACAGCAGCATTTCAACCAGCACGTCTTCAAGATGGAGCAAGAGGAATATACAAAGGAAGAGATTAATTGGAGTTATATTGAGTTCGTTGATAATCAAGATGTTCTTGATCTCATAGAGAAGAAACCTGGTGGTGTTATTGCTCTCCTGGATGAGGCCTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGCTATACCAAACCTTTAAAGACAACAAACGCTTCAGCAAGCCAAAGTTGTCTCGCACAGACTTTACCATTAACCACTATGCTGGTGATGTCACTTATCAAACTGATTTTTTCCTTGATAAAAATAAAGACTACGTTGTTCCAGAGCATGCTGCTCTACTCAGTGCTTCGAAGTGCCCCTTTGTTTCAGGGTTGTTCCCTCCTTTACCCGAGGAAACTACAAAATCGACAAAGTTCTCTTCTATAGCCACTCAGTTTAAGCTACAACTGCAATCTTTGCTTGAAACACTAAACGCTACCGAGCCTCACTATATTCGTTGTGTAAAGCCAAATAATCTTCTCAAGCCTGGGATATTCGAGAACAATAATGTGTTGCAGCAGCTTCGGTGTGGAGGAGTAATGGAGGCAATTCGGATAAGTTGTGCTGGATATCCCACTAGAAAGTCCTTTGATGAATTTGTTCAGCGGTTTACCATCCTGGAATCTTCAGTTCTGAAAGCATGCCCTGATGAGGTGACGGCTTGCAAGAGGCTTCTAGATAGAGCGAACCTTAAAGACTATCAGATTGGAAAGACAAAAGTGTTTCTAAGAGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCTGAGGTCCTAGGATTGTCTGCAAGTGTTATTCAGAGAAAAGTCCGCACGTTTCTCTGTCGGAAACAATACGTCTTATTGCAGTTGTCGGCCATAGAACTTCAAAGGGTTGCGAAAGGACAACTTGCACGACGTCAGTATGAATGCATGAGGAGGGAAGCCGCTTCTATAAAACTTCAGAAAGATTTCCGCATGTATATTTCCAGAAAGTCTTACAAAACTAAATATGCCTCAGCGATTTGTATTCAAACTGGTATGCGAGGGATGGCTGCTAGAAATGATCTTAGCTTTAGGAGACGGACAAAAGCTGCAATTATTATTCAGGCTCGGCAAAGATGTCATTCGGCTCGTACTTATCACCTGAAGCTAAAGAAAGCAGCAATTTTTGCACAGTGTTCCTGGAGAAGAACAATAGCACGGAGAGAACTTCGAAAGCTTAGAATGGCTGCCAGGGAAGCTAAAGCACTTGAAGAGGCAAAAAATAATCTGGAAAAGCAAGTCAAAGAGTTAACTTCAAGTCTAGAAGAAGAAAAGGCGATGAGGATGGAGCTTCAGTTCCAAGAAATTAATGAATCCAAGACACAGGAAACTGAAAAACTACAAAATGCTTTGAAAGAGATGGAACTTCAGTTCCAAGAAATTCAGGAAGCCAAGACACAGGAAACTGAAAAACTAGAACATGCTTTGAAAGAGATGGAGCTTCAGTTCCAGGAAACTAAGGCAGCGCTCATTCAGGAACAAGAAGCTGCCAAGAAATTAGCTGATCAAAACCCAACTATACAGGAGAAATCTGTTAATGATGTTGACAATGAATTGATCAGTAAGCTTACAGCAGAAAATGGTCAACTCAAGGAACTGGTTAATTCTTTGGAAAAGAAAACTTTGCAGGAGATACCTGCTAATGTTACTTACAATGAGTTGATCAGTAAACTTACTTCAGAAAATGAAAATCTTAAGGAACGGATTAATTCATTGGAAAAGAAAACTGTACAGGAGTTTCCAGTTAACCTTACTGACAATGAGTTGATCAATAAACTTACTTCAGAAAATGAAAACCTTAAGGAACGGATTAATTCATTGGAAAAGAAAAGGGTACAGGAGTTTCCTGCTAATGTTACTGAAAATGAGTTGATCAATAAATTTGACTCCGAAAAGGAAAATGTTAAGACAGAAAACGAACAGCTTAAGGTAAAAATTGATGAAACAGAGAGGAAATATGAAGAATGTAACAAGATTAGTGAGGAGCGCATGAATCAAATCATAGAGACAGAATCAAAGATGATTGAGATAAAGACAAATATGCAGAGGCTTGAAGAAAAAGTGTCCGATATGGAAACTGAGAATCAAGTTTTGCGGCAGCAAACCTTGTTGAGTTCATCATCATCCAGAAGAATGTCAGGAAAGTTTTCCCCTGCTACAGTTCCGGTAAATACAAGATCATTGGCGCAACAGACTTCTGCTCCTGCAAAAACATTTGGTTCAGAGGATAGTAAAGTAAGAAGATCTCTTATGGAGAGACATCAAGAGAGCATAGATGTTCTTTTCAAATGTGTGACAAAAGATCTCGGATTCTGTGAAGGAAAACCTGTTGCAGCATTTACCCTTTACAATTGTCTGCTACATTGGAAATCTTTTGAAGCAGAAAAAACCAGCATATTTGATCGTCTTATTCAGATTATTGGTTCTGAAATAGAGGATCCAGACAAAAATGATTGTATGGCTTATTGGCTATCCAACACATCTTCTTTGTTTTTCCATCTTCATCGATGTTTAAGAGTACCAACAGCGCGGAAACCTCCCACTCCAACATCATTTTTTGGGAGGATGGCGCAGGGTTTTCGCTCATCTAATAGTCTTTCCAGCAGTGCTTTTGATGTAGTGCATCAGGTTGATGCCAAGTATCCAGCTTTGCTTTTCAAGCAACAGCTTGCAGCTTACGTGGAAAAAATATATGGAATCGTTCGAGAAAATTTCAAGGCAGATTTGACACCTCTACTTTCTTCTTGCATTAAGGCAGATAGAGAATCAAATGACAACAGTCAACAAGCTGGTTCTTGGCTCAGCATTATGGAATGCCTTAATAAATATCTCAAGATTATGAAAGAAAACTATGTCCCTACTGTTCTAGTTCAAAAGCTATTTAATCAAATTTTTCAATACATCAATGTGGAACTCTTTAATAGCATTCTTTTGCATGGAGAATGCTGCACATTCAAACATGGAGAATATATAAAATCAGGTTTGGCAGAACTAGAAGGATGGTGTACTGAAGCAACGGAAGAGTACATTGGCTCATCTTTGGATGAACTCAAACATGCAACACAAGCAGTTAAATTCTTGGTTGCTGAAAAGAAGGAAGACCTATCTTATGATGACCTTACAAACGACCTATGCCCTGTCCTGAGTGCTCAACAACTTTATAGAATATGTACACTTTACTCTGATGATGATGATGACAAAAAACAAAGTGTATCAACAGATGTCACTACTAGATTGAAGCTTCTGATGACAGATGATGCAGATGAAGATAGTAAAACCTACTTGTTGGAGGACAACACAAGCCATCCTATCATAGTTGAAGAGATTCCTTCTTCTCAAGATAAGAGCACTCCAAAAGTAAAACCGCCTGCAGAACTTCTTGAGAATGCAAACTTCCAATTTCTGCATGACTATTGCTAG	4911	0.3956	MIKALIILLNAQAGQLNLVVGSHVWVEDPELAWIDGEIQESKKDEVTILFESGTRVVSKSANMYPKDPEFPPAGVEDMTRLAYLHEPGVLQNLHIRYSLNDIYTYTGNILIAVNPFQRLPHLTETSTMAKYKAAAFGEQSPHPFAIASSAYRKMINEEKSQSILVSGESGAGKTESTKMLMHYLAFLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEESGKYKLGDPRKFHYLNQSNCIELDGLDDSKEYLATRRAMEVVGISGDEQDAIFRIVAAVLHLGNIEFIKGSEDELDSSQPKDEKSIYHLKTAAELLMCDEKSLEDSFCKRVMVTRGDTITKSLDPTAAALSRDALAKIVYSRLFDWIVCKINNTIGQDPDSTKLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTFKDNKRFSKPKLSRTDFTINHYAGDVTYQTDFFLDKNKDYVVPEHAALLSASKCPFVSGLFPPLPEETTKSTKFSSIATQFKLQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNNVLQQLRCGGVMEAIRISCAGYPTRKSFDEFVQRFTILESSVLKACPDEVTACKRLLDRANLKDYQIGKTKVFLRAGQMAELDACRAEVLGLSASVIQRKVRTFLCRKQYVLLQLSAIELQRVAKGQLARRQYECMRREAASIKLQKDFRMYISRKSYKTKYASAICIQTGMRGMAARNDLSFRRRTKAAIIIQARQRCHSARTYHLKLKKAAIFAQCSWRRTIARRELRKLRMAAREAKALEEAKNNLEKQVKELTSSLEEEKAMRMELQFQEINESKTQETEKLQNALKEMELQFQEIQEAKTQETEKLEHALKEMELQFQETKAALIQEQEAAKKLADQNPTIQEKSVNDVDNELISKLTAENGQLKELVNSLEKKTLQEIPANVTYNELISKLTSENENLKERINSLEKKTVQEFPVNLTDNELINKLTSENENLKERINSLEKKRVQEFPANVTENELINKFDSEKENVKTENEQLKVKIDETERKYEECNKISEERMNQIIETESKMIEIKTNMQRLEEKVSDMETENQVLRQQTLLSSSSSRRMSGKFSPATVPVNTRSLAQQTSAPAKTFGSEDSKVRRSLMERHQESIDVLFKCVTKDLGFCEGKPVAAFTLYNCLLHWKSFEAEKTSIFDRLIQIIGSEIEDPDKNDCMAYWLSNTSSLFFHLHRCLRVPTARKPPTPTSFFGRMAQGFRSSNSLSSSAFDVVHQVDAKYPALLFKQQLAAYVEKIYGIVRENFKADLTPLLSSCIKADRESNDNSQQAGSWLSIMECLNKYLKIMKENYVPTVLVQKLFNQIFQYINVELFNSILLHGECCTFKHGEYIKSGLAELEGWCTEATEEYIGSSLDELKHATQAVKFLVAEKKEDLSYDDLTNDLCPVLSAQQLYRICTLYSDDDDDKKQSVSTDVTTRLKLLMTDDADEDSKTYLLEDNTSHPIIVEEIPSSQDKSTPKVKPPAELLENANFQFLHDYC	1636

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vian10g01870	1636	ProSiteProfiles	IQ motif profile.	796	822	IPR000048	GO:0005515
Vian10g01870	1636	Pfam	DIL domain	1457	1560	IPR002710	-
Vian10g01870	1636	FunFam	unconventional myosin-Va	798	846	-	-
Vian10g01870	1636	Coils	Coil	883	924	-	-
Vian10g01870	1636	ProSiteProfiles	Myosin motor domain profile.	73	745	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	Coils	Coil	1045	1072	-	-
Vian10g01870	1636	PANTHER	MYOSIN	65	1570	-	-
Vian10g01870	1636	Pfam	Myosin N-terminal SH3-like domain	21	59	IPR004009	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	ProSiteProfiles	IQ motif profile.	819	848	IPR000048	GO:0005515
Vian10g01870	1636	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	46	799	IPR027417	-
Vian10g01870	1636	Coils	Coil	1080	1107	-	-
Vian10g01870	1636	Coils	Coil	930	993	-	-
Vian10g01870	1636	Coils	Coil	1164	1198	-	-
Vian10g01870	1636	Gene3D	-	846	896	-	-
Vian10g01870	1636	Gene3D	-	749	797	-	-
Vian10g01870	1636	Gene3D	-	798	845	-	-
Vian10g01870	1636	SMART	iq_5	795	817	IPR000048	GO:0005515
Vian10g01870	1636	SMART	iq_5	843	865	IPR000048	GO:0005515
Vian10g01870	1636	SMART	iq_5	818	840	IPR000048	GO:0005515
Vian10g01870	1636	SMART	iq_5	770	792	IPR000048	GO:0005515
Vian10g01870	1636	SMART	iq_5	866	888	IPR000048	GO:0005515
Vian10g01870	1636	SMART	iq_5	747	769	IPR000048	GO:0005515
Vian10g01870	1636	CDD	MYSc_Myo11	87	733	IPR036018	-
Vian10g01870	1636	ProSiteProfiles	IQ motif profile.	771	800	IPR000048	GO:0005515
Vian10g01870	1636	Gene3D	Myosin VI head, motor domain, U50 subdomain	323	614	-	-
Vian10g01870	1636	FunFam	Myosin heavy chain	263	318	-	-
Vian10g01870	1636	Coils	Coil	1017	1037	-	-
Vian10g01870	1636	Pfam	Myosin head (motor domain)	75	733	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	FunFam	Myosin 2	323	438	-	-
Vian10g01870	1636	PRINTS	Myosin heavy chain signature	495	523	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	PRINTS	Myosin heavy chain signature	442	470	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	PRINTS	Myosin heavy chain signature	160	185	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	PRINTS	Myosin heavy chain signature	103	122	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	PRINTS	Myosin heavy chain signature	207	234	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	Gene3D	-	680	743	-	-
Vian10g01870	1636	ProSiteProfiles	IQ motif profile.	867	896	IPR000048	GO:0005515
Vian10g01870	1636	SMART	DIL_2	1456	1563	IPR002710	-
Vian10g01870	1636	Gene3D	Kinesin motor domain	76	675	IPR036961	-
Vian10g01870	1636	Coils	Coil	1122	1156	-	-
Vian10g01870	1636	ProSiteProfiles	IQ motif profile.	844	870	IPR000048	GO:0005515
Vian10g01870	1636	Gene3D	-	263	321	-	-
Vian10g01870	1636	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	799	895	IPR027417	-
Vian10g01870	1636	SMART	MYSc_2a	67	746	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	CDD	MyosinXI_CBD	1249	1604	IPR037975	GO:0007015
Vian10g01870	1636	Gene3D	-	452	636	-	-
Vian10g01870	1636	FunFam	Class V myosin	452	589	-	-
Vian10g01870	1636	ProSiteProfiles	Myosin N-terminal SH3-like domain profile.	19	68	IPR004009	GO:0003774\|GO:0005524\|GO:0016459
Vian10g01870	1636	Pfam	IQ calmodulin-binding motif	751	768	IPR000048	GO:0005515
Vian10g01870	1636	Pfam	IQ calmodulin-binding motif	798	817	IPR000048	GO:0005515
Vian10g01870	1636	Pfam	IQ calmodulin-binding motif	845	864	IPR000048	GO:0005515
Vian10g01870	1636	Pfam	IQ calmodulin-binding motif	774	791	IPR000048	GO:0005515
Vian10g01870	1636	FunFam	unconventional myosin-Va	847	894	-	-
Vian10g01870	1636	ProSiteProfiles	Dilute domain profile.	1298	1582	IPR002710	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian10g01870	Vian-Chr10	30677996	30692505	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian10g01870	1415	1634	Myosins gene family	AT1G04600	53.394	3.62e-58	220