Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01861 ATGGCTCAGGTTCCGTTTCCCTCGAACCTTTTGCCAGTAGATGGAAGCCCTGAATGGATGAGTAGGGCAGACAATGCATGGCAGCTTGTGGCTGCAACACTGGTGGGTCTGCAGAGTGTACCAGGGCTCATAATATTGTATGGTGGAGCTGTGAAGAAGAAATGGGCAGTGAACTCAGCATTCATGTGCCTCTATGCTTTTGCATGTGTGTTTTTCTGTTGGGTTGTGTGGGGATACAGAATGTCTTTTGGTGACCCACTTGTTCCTTTCTGGGGAAAGCCTGCTATGTCACTTAATCATGTATATCTCTTCGACAAGGCCTTTCTGGGGGCCTTCCCTAATGCCACAATGGTGTATTTCCAGTGTGTGTTTGCAGCCATTACTCTGATTCTCATTGCTGGGGCTGTTTTGGGGCGCATGAACTTCTATGCTTGGATGCTGTTTGTGCCTTTGTGGCTCACATTCTCATACACCTTCACAGCTTTCAGCATATGGAGTACAAAGGGCTTCTTGTCCAAAATGGGGATTATAGATTACTCAGGTGGATATGTCATCCATTTGTCTTCTGGGGTTGCTGGTTTCACTGCTGCATTTTGGGTTGGGCCAAGACTAAACAAGGACAGGGAAAGGTTTCCTCCAAACAACATCCTTCTGATGCTGGCAGGTGCAGGGATGTTGTGGATGGGGTGGACAGGGTTCAATGGAGGAGATCCATACACAGTAAATGCAGATGCTTCACTTGCCGTCCTCAACACCCACGCTTGCACTGCCACCAGCTTGCTCGTTTGGGTCATTCTTGATGTCATCTTTTTCCGAAAACCTTCTGTCATTGGAGCTGTTCAAGGCATGATCACTGGTTTGGTCTGCATTACTCCTGCTGCAGGAGTTGTGGAGGGATGGGCAGCACTTCTAATGGGAGTGTTCTCTGGGTCAATACCTTGGTTCACCATGATGGTGATCCACAAGAGATCAAAGCTACTGCAGAAGGTTGATGACACAATGGCAGTATTCCACACTCATGCCATTGCAGGAACCTTGGGAGGACTACTCACTGGACTGTTTGCCGAGCCAAGACTCAACACATTGTTCTATGGAGCTGCTAATCAATACGTTGGCTTTTTCTATGGTTTCCATTCCAAAAGGATACACACAGGGTTCAGGCAAATGGGGGTACAAATCATCGGGATTATCTTTGTTGTCTTTGTCAATGTTGTGTCCACAAGCTTGATATGCCTCTTCATCAGACTTTTTGTTCCACTGAGAATGTCTGAAGAGGATATGGAGATTGGTGATGAAGCTGCTCATGGGGAAGAGGCTTATGCCATCTGGGGTCAGGGTGATAAACTTGAAAATTCAAGTTCAAAGTATGGAAGTTCATTGTATGATGATGTTGAAGCTGGGGCACACAAGAAGAAACATGGTGGCGTGGTTGAGATGATGTAG 1443 0.4678 MAQVPFPSNLLPVDGSPEWMSRADNAWQLVAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMCLYAFACVFFCWVVWGYRMSFGDPLVPFWGKPAMSLNHVYLFDKAFLGAFPNATMVYFQCVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSTKGFLSKMGIIDYSGGYVIHLSSGVAGFTAAFWVGPRLNKDRERFPPNNILLMLAGAGMLWMGWTGFNGGDPYTVNADASLAVLNTHACTATSLLVWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVEGWAALLMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVFHTHAIAGTLGGLLTGLFAEPRLNTLFYGAANQYVGFFYGFHSKRIHTGFRQMGVQIIGIIFVVFVNVVSTSLICLFIRLFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYDDVEAGAHKKKHGGVVEMM 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01861 480 ProSitePatterns Ammonium transporters signature. 178 203 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vian10g01861 480 Gene3D Ammonium transporter AmtB like domains 13 444 IPR029020 -
Vian10g01861 480 PRINTS Rhesus blood group protein signature 217 235 IPR002229 GO:0005886
Vian10g01861 480 PRINTS Rhesus blood group protein signature 121 137 IPR002229 GO:0005886
Vian10g01861 480 PRINTS Rhesus blood group protein signature 248 270 IPR002229 GO:0005886
Vian10g01861 480 NCBIfam ammonium transporter 24 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vian10g01861 480 FunFam Ammonium transporter 9 443 - -
Vian10g01861 480 Pfam Ammonium Transporter Family 26 440 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vian10g01861 480 PANTHER AMMONIUM TRANSPORTER MEP2 9 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vian10g01861 480 SUPERFAMILY Ammonium transporter 19 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01861 Vian-Chr10 30486784 30488745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01861 115 474 Inorganic Solute Cotransporters AT2G38290 61.389 5.90e-145 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01861 K03320 - gmx:100787856 890.182