Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01857 ATGAAAATTCCAAAGGAGTGTGTGGTCCAGAGTTGTTCTTCTGAATTGGGTCTCTCTCTCTCTCTCTGTTTTCTTGCTCACCTTGTTGAACTTTACCAGACTGTGAAGATGAGTTCACGATCTTTGAGGGGAAGTCGTCAGAGAAAGATGTTGCAGCTGGACCTGAACCTGGTGCCACCATTAGAGGATAACACTGTCCAAATCGATGTTGATTCAAATCAGAACGATGCAGATGATGACGACGTGGTTGAACTGTCACCAACTTCATTTGCTCAGACTCGGAGCAATCCGAAGAGAAGGATGAAGAGGAGGAGCATTTATGATATAGATGATGAGACTGGAGAATTGCCAAAAGAGATAGTAATTGACGGAAAAGTCTATAGAACTGTGGAAACTGGTAGCAGTTCTACGGAAGAAAATGAAAGGAAAACACCTGAACCTCCTAAGAAGCCGCCTGCACTTGACTGTCCAATATGTATGTCTGCATTTGAAGAACCGATGTCTACGAGGTGTGGTCATATCTTTTGTAGGTGTTGCATTAACACTGCAATAGCTGCACAGGGTAAATGCCCTACCTGCAGAAAGAAGGTTACAAAGAATCAACTCATAAGGGTGTTTCTTCCATCTCTTAGTTAA 636 0.4292 MKIPKECVVQSCSSELGLSLSLCFLAHLVELYQTVKMSSRSLRGSRQRKMLQLDLNLVPPLEDNTVQIDVDSNQNDADDDDVVELSPTSFAQTRSNPKRRMKRRSIYDIDDETGELPKEIVIDGKVYRTVETGSSSTEENERKTPEPPKKPPALDCPICMSAFEEPMSTRCGHIFCRCCINTAIAAQGKCPTCRKKVTKNQLIRVFLPSLS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01857 211 MobiDBLite consensus disorder prediction 71 102 - -
Vian10g01857 211 MobiDBLite consensus disorder prediction 127 151 - -
Vian10g01857 211 Pfam Zinc finger, C3HC4 type (RING finger) 156 193 - -
Vian10g01857 211 MobiDBLite consensus disorder prediction 135 149 - -
Vian10g01857 211 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Vian10g01857 211 SMART ring_2 156 193 IPR001841 -
Vian10g01857 211 SUPERFAMILY RING/U-box 155 200 - -
Vian10g01857 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 210 IPR013083 -
Vian10g01857 211 ProSiteProfiles Zinc finger RING-type profile. 156 194 IPR001841 -
Vian10g01857 211 PANTHER ELFLESS, ISOFORM B 35 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01857 Vian-Chr10 30464038 30466457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01857 43 209 C3H Transcription Factor Family AT5G48655 40.513 7.87e-30 108