Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01851 ATGAACTCTCTCTTTTCGCTTGAAAACCTTCCTCCACCACCGGGAATTCCAATCCCCGCCTCAATTGCCGCCGCCACAGCCACCACCAGCGCCTCCCCGGCCCCAACACTAATCCCAAAGCTCGAACCTTTCGACGGATGGCTCAACAACCCCACTTCCCAACAAAAACAATCTCAGGACTCCAATTTTTCAAATGGGTCTCTGGACCTCGACCTCGACCTCAATCTTGTATGCGACGGAACCTCCGACGAACCAAACAACAACAACAACTTATTTTCCGAGTTCAACAGAATCTCCCAGCTTTTCCACACTGCGTTCTCCGCCAACGACCCCCAAAATGACGCCGTTCCCGACCCCATCACCGATAGCCTGCAGCAGCTCCGAAACGACGCCTTTTCCAACCCTTTTGCCGAAAACTCGCAGCACATCAAAACCGAAGCCGATTCGGTCCCATGGCTGCAGCAGGCCCCAAAGGGCATCGTTCCGGACCCGGATTCGCGGGCAATTGTGCCCGTTCCGGAGGAGCAGCAGTCTTCTTCGATGGTGGCCGCAACCACGCCGAGGCGACGGTGTAAGGAGCTGGTTCGGGTGGCGGATCTTGGCGGGCCGGAGCATCGGCACTTCCGGGACGTTGTCCGGCGGACTCGGATGGTGTATGACTCGTTGCGCGTGCTGGCGACGGTGGAGGACGAGCGGCGGGTGGACGCCCGCAAGGGGCGCAGCGATTTGCGAGCCTCGGCCGTGATGAGGAGCTGTGGTTTGTGGTTGAATCGCGACAAGAGAATTGTTGGTGCGATTCCTGGTGTTTGTGTTGGTGATGTGTTCCTCTATAGGATGGAGTTGTGCGTGGTTGGGTTGCACGGTCAGGCTCAGGCCGGCATCGATTATCTTCCTGGCAGCATGAGTTCCAACGGCGAACCAATTGCCACGAGCGTGATTGTCTCAGGTGGTTACGAGGATGATGTTGACGAGGGTGATGTTATCACCTACTCCGGCCATGGTGGGCAGGACAAGAATTCTCGGCAGGTTTGTCACCAGAAGCTTGAGGGAGGGAACCTTGCAATGGAGCGGAGTAAACACTATGGGATTGAGGTGAGGGTGATTCGCGGGGTGCGCTGTGAGGGTGCAGCCTCTGGCACTGGGAAGTTGTATGTGTATGACGGCTTGTATACGATTATCGATTGCTATTTTGATGTTGGGAAGTCGGGTTTCGGTGTTTTTAAGTTCAAGCTGTGTAGGATCGATGGGCAAGCTAAGATGGGGAGCACGTTCATGAAGGAAGCGCAAATGCTAAAGAAGGATCCTTTGAGTTTCAAACCCACGTGTTGTGTTTCGCTTGATATTTCAAGCAGGAACGAGAATGTGGGGGTTCGCCTTTTCAATGATCTTGATCGCAATTTCGACCCTCTCAGGTATGAATACCTTGTGAAGACAAACTTTCCTGAGTTTGTTTTTCACCAGAGTGGGAGGGGTACGGGTTGTGATTGTGTGGACGGGTGTGTTGAAGGGTGCTTCTGTGCCATGAAGAACGGAGGGGAGTTTCCCTATACTCACAGTGGGATTCTCTTGAGAGGGAAGCCTTTGGTTTTTGAGTGCGGCCCGTTTTGTCAATGCCCCCCTCATTGTCGGAATCGGGTGACGCAGAAGGGGCTCAAGAACAGGATGGAGGTGTTCAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCTGGTGCTTTTATATGTGAGTACACAGGGGTTGTGCTCACTAGGGAGCAAGCAGAACTTTTGTCCATGAATGGTGATTCCTTGATATATCCGAATCGGTTCACTGATAGGTGGTCGGAATGGGGTGACTTGTCTATGATAGACTCCAATTATGTGCGTCCATCTTATCCCTCGCTCCCTCCTTTGGATTTTGCTTTGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATGAGTCATAGTTCCACTCCCAATGTGTTGGTTCAGTTTGTCTTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTGTTTGCAATGGAGAACATCCCTCCCTTGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGACGAGTGGACAGCAAAACTCGCTATATGTAACTGA 2130 0.5216 MNSLFSLENLPPPPGIPIPASIAAATATTSASPAPTLIPKLEPFDGWLNNPTSQQKQSQDSNFSNGSLDLDLDLNLVCDGTSDEPNNNNNLFSEFNRISQLFHTAFSANDPQNDAVPDPITDSLQQLRNDAFSNPFAENSQHIKTEADSVPWLQQAPKGIVPDPDSRAIVPVPEEQQSSSMVAATTPRRRCKELVRVADLGGPEHRHFRDVVRRTRMVYDSLRVLATVEDERRVDARKGRSDLRASAVMRSCGLWLNRDKRIVGAIPGVCVGDVFLYRMELCVVGLHGQAQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVITYSGHGGQDKNSRQVCHQKLEGGNLAMERSKHYGIEVRVIRGVRCEGAASGTGKLYVYDGLYTIIDCYFDVGKSGFGVFKFKLCRIDGQAKMGSTFMKEAQMLKKDPLSFKPTCCVSLDISSRNENVGVRLFNDLDRNFDPLRYEYLVKTNFPEFVFHQSGRGTGCDCVDGCVEGCFCAMKNGGEFPYTHSGILLRGKPLVFECGPFCQCPPHCRNRVTQKGLKNRMEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAELLSMNGDSLIYPNRFTDRWSEWGDLSMIDSNYVRPSYPSLPPLDFALDVSRMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPLRELSLDYGVADEWTAKLAICN 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01851 709 Pfam Pre-SET motif 448 545 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g01851 709 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 110 697 - -
Vian10g01851 709 SMART set_7 553 702 IPR001214 GO:0005515
Vian10g01851 709 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 107 709 IPR025794 GO:0016571
Vian10g01851 709 ProSiteProfiles Pre-SET domain profile. 492 550 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g01851 709 ProSiteProfiles SET domain profile. 553 696 IPR001214 GO:0005515
Vian10g01851 709 ProSiteProfiles YDG domain profile. 264 413 IPR003105 -
Vian10g01851 709 Pfam SET domain 564 696 IPR001214 GO:0005515
Vian10g01851 709 Gene3D - 261 421 IPR036987 -
Vian10g01851 709 MobiDBLite consensus disorder prediction 33 65 - -
Vian10g01851 709 SMART preset_2 445 537 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vian10g01851 709 Pfam SAD/SRA domain 263 417 IPR003105 -
Vian10g01851 709 SMART G9a_1 259 417 IPR003105 -
Vian10g01851 709 MobiDBLite consensus disorder prediction 47 65 - -
Vian10g01851 709 SUPERFAMILY PUA domain-like 245 426 IPR015947 -
Vian10g01851 709 Gene3D SET domain 422 709 IPR046341 -
Vian10g01851 709 SUPERFAMILY SET domain 437 708 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01851 Vian-Chr10 30400198 30402327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01851 209 698 Su(var)3-9 homologs AT5G04940 37.903 5.43e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vian10g01851 SAD_SRA 1.1e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01851 K11420 - gmx:100795514 1108.59