Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01848 ATGGGGAGGATCAAACCTCATGTTCTGCTACAGCAAAGCAAAAGGAAGAAGGGACCTTCTCGCATAAGTGCCACAACTATTATAGTCTGTACATTGATTATTGTCATGCTTATGTATTTCATGTTTTATAGACACTGGTCCAACAGGTTAGTAAAAGTAAGAAAACGCCTTCTCGCTTTGTTGCAGGATGAAAATACACTTGTGGAATCCAAAAAATCTGATCTACCTGGATATGCGGTAGTAATTACCTCTAAAGGCTCTATTATAGTAGAACTTTACAAGGAAAGTGCCCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGAATGCTTTTTCACCAAGTAATTAAGCACTATGTAATTCAGGCTGGTCATAACAAAGGGCCCGGAGCTACTGAAGATTGGAACTTGTTAGGAAAGAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACTTCGAAGGGTAATTACTTCAACAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAGTGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGAGAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAACCAAAAATTTCTATTGGGATACTTGATGTGGCTCTTAAAGAGATGGTGTGA 687 0.3828 MGRIKPHVLLQQSKRKKGPSRISATTIIVCTLIIVMLMYFMFYRHWSNRLVKVRKRLLALLQDENTLVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHNKGPGATEDWNLLGKKYASMRHEAFMLGTSKGNYFNKGFDLFITTAPIPDLSEKLIVFGRVIKGEDIVQEIEEVDTDEHYQPKISIGILDVALKEMV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01848 228 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 86 224 IPR002130 GO:0000413|GO:0003755
Vian10g01848 228 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 225 - -
Vian10g01848 228 SUPERFAMILY Cyclophilin-like 75 223 IPR029000 -
Vian10g01848 228 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 81 222 IPR002130 GO:0000413|GO:0003755
Vian10g01848 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Vian10g01848 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 184 199 IPR002130 GO:0000413|GO:0003755
Vian10g01848 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Vian10g01848 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 171 183 IPR002130 GO:0000413|GO:0003755
Vian10g01848 228 CDD cyclophilin 83 221 - -
Vian10g01848 228 Gene3D - 63 227 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01848 Vian-Chr10 30320259 30323780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01848 77 224 U-box Gene Family AT5G67530 25.974 2.04e-13 67.0