Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01847 ATGAAACCTGACTTGTACGAAATCTCCGACGACGAATGGGAGAATCACTCCTTCAAACCTTCGCGCGTCCTCAAACGACCTCGCACTTCGTCTCCTCCTTCCCCTCCACCTATCGAGTCCTTCGCTTACACCTCTAAGGTCGACGTTTTAAGCGAAAACGACAGCGATTGCGTCGAAATCGCCCCGAACGACGCCGATTTCCTCGACGACCTCGAGGACGCCGACGTGGACGCTTCCGGCGGAGGTTATGCGGCGGCCTCGCGAGGCCGGAGGTTCATCATCGATGACGAAGACGAAGACGCTGAGGAGAACGGTGGAAGAGACGGACGCGTGGCGGAATTGTACGAGGTGGAAGAAGAAGAAGTTGAAGAGTTGAACGAAAACGATGTCGTTGGTAGGGCTTTGCATAAGTGCGCGCGAATCTCTGCGGAGTTGAAGGGCGAACTCTTCGGCTCGACGGGGACCGCGTGCGAGAGGTATTCGGAGGCGGAGTCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTGGATGTTGCGTGTGCGTCGGAGGATTCGGATTTTCAGCCATTGCTAAAGCCGTATCAGTTGGTTGGTGTCAACTTTTTGCTTCTGCTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCGGATGAAATGGGTCTCGGCAAAACAGTTCAGGCCATCACATATTTAACTCTGTTGAAACGCTTGCACAATGATTCTGGTCCACATCTTATAGTCTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAGATGGTGTCCGTACTTTTCTGTTCTTCTATATCATGGTGCTGGACGTGCAGCGTACTGCAAGGAGTTGAACTCTTTGTCCAAGGCAGGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTACGAGCGTCACAGTGCACAGCAGAAAGATGATCGGAAAATTCTGAAGAGATGGAGATGGAGCTGTGTGTTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAACGTTTGATGTTGACTGGGACACCACTTCAAAATGATCTACATGAATTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGACGTTGACCTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGGATGAAATCCATCTTGGGGCCGTTTATTTTGCGCCGACTGAAATCTGACGTGATGCAACAACTTGTTCCAAAAATACAGCAAGTTGAATATGTTATAATGGAAAGGCAGCAGGAATCTGCTTATAAGGAAGCCATTGAAGAGTATCGTGCAGTTTCACAAGCTCGGATGGCAAAATGTTCTGAGCTTAATTCAAAAAATTTACTAGCAGTGCTTCCCCGGCGACAGATAAATAACTATTTCGTTCAGTTCCGCAAGATAGCAAATCATCCCTTGTTAATAAGGCGAATCTACAATGATGAGGATGTCATCCGCTTTGCTAGGAAGCTACATCCAATTGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAACTTAAAAATTACAACGACTTTTCTATTCACCGGCTTTTACTTCACTATGGTGTCAATGATAAAAAGGGGATCCTTTCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAATAAGGATGGCCATCGAGTCTTGATCTTTAGTCAATGGACCTCAATGCTTGACATATTGGAGTGGAGTTTGGATGTCATTGGATTGACCTATAGACGGCTAGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAATAACGATACTTCAATATTTGCATGCTTACTTTCCACGAGAGCTGGTGGTCAGGGCTTAAACTTAACAGGAGCTGATACAGTTGTGATTCATGACATGGATTTTAACCCACAGATTGATAGGCAAGCTGAAGATCGTTGCCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTAGTGACCAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAAAGAAAACTAGTATTAGATGCTGCCGTTCTCGAGTCCATGGAGGAGATCAATGAAGGTGACATGCCCGAGAAGACCATGGGAGAGATATTGTCTGCTATTTTATTGAGTTAA 2223 0.4512 MKPDLYEISDDEWENHSFKPSRVLKRPRTSSPPSPPPIESFAYTSKVDVLSENDSDCVEIAPNDADFLDDLEDADVDASGGGYAAASRGRRFIIDDEDEDAEENGGRDGRVAELYEVEEEEVEELNENDVVGRALHKCARISAELKGELFGSTGTACERYSEAESSSVRIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKRLHNDSGPHLIVCPASVLENWERELKRWCPYFSVLLYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLYERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQESAYKEAIEEYRAVSQARMAKCSELNSKNLLAVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIEELKNYNDFSIHRLLLHYGVNDKKGILSDKHVMLSAKCRALAELLPSLNKDGHRVLIFSQWTSMLDILEWSLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEILSAILLS 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01847 740 Pfam Helicase conserved C-terminal domain 567 679 IPR001650 -
Vian10g01847 740 MobiDBLite consensus disorder prediction 17 38 - -
Vian10g01847 740 SMART ultradead3 187 392 IPR014001 -
Vian10g01847 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 417 IPR027417 -
Vian10g01847 740 CDD DEXHc_Snf 191 384 - -
Vian10g01847 740 Gene3D - 160 405 IPR038718 -
Vian10g01847 740 PANTHER SNF2/RAD54 HELICASE FAMILY 115 717 - -
Vian10g01847 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 721 IPR027417 -
Vian10g01847 740 FunFam Protein CHROMATIN REMODELING 19 isoform A 162 440 - -
Vian10g01847 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 382 IPR014001 -
Vian10g01847 740 CDD SF2_C_SNF 557 690 - -
Vian10g01847 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 570 737 IPR001650 -
Vian10g01847 740 Gene3D - 428 737 IPR027417 -
Vian10g01847 740 SMART helicmild6 596 679 IPR001650 -
Vian10g01847 740 Pfam SNF2-related domain 211 497 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01847 Vian-Chr10 30309174 30319053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01847 212 718 RAD5 or RAD16-like Gene Family AT5G22750 26.677 3.40e-45 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian10g01847 SNF2_N 5.4e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01847 K14439 - gmx:100806323 1291.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01847 10 30309174 30319053 Vian10g01847 10 30309174 30319053 ECH