Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01846 ATGGCTTCTGGTTCCTCATCCACACCCTTTTTGGGAATCAGACAAGAAAATCAAACTCAGGTTTCACAACAGCACCAATCCTCCACAGCTGCTTCCTCATCTACTACTACTACTACTTCTACTACTACCACTCCAACCACAATGCCTCAGAAGAAAAGAAGGAATCAACCAGGAACACCATATCCAGATGCTGAGGTGATAGCACTGTCTCCGAAGACTCTAATGGCAACAAACAGGTTTATATGCGAAGTGTGCAATAAAGGGTTTCAAAGGGAGCAAAATCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCGAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAGGCTCACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCTTTAGCACATGAGAATGCAAGACACCCTTCAAACCTGAACCCTTTGGGAGCTCATCATCTGTATGGCACAAACCACATGAGCCTAGGCCTAGGGGCCCAACTGCAGAACCAAGCAGCTTCTGCTAACAGCTTATTGAGCCTTGGAAGTGCACAAAAGTTTGAGCACTTAATCTCTCCTAATCTGCACCACTCCTCTTCATTTGGAGTGCAGTCACCATCCCATTCATCATTCTTCATGACTGACCCAAACCAAGCATTTCAAGACCTTCATCAGTCTCAGCAACAAGGACCCTTATTCTCAACCAAGCAACTCCACGGTCTTATGCAACTCCCTGATCTTCAAGGAACCACCACCAACAACTCCACCTCTGCCTCATCATTATCTGCTTCAGCTAACAACGCCAATCTCGTCAACCTCAGCTTCTTTCCTAATACCAATACCCGTGGCAGCATAATCAACGACCAATTCAGCAACATAAGTGGAGGCAATGACCAAGGAACAACAACACTCTATAATTCTAGTAGCCCTGTAAGTAACCAAGTTGGTTCAGGCTTGTCTTCAGTCTTTGGTAATTCTTCTTTGCAACAAGATAGCATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCAGCTCAAATGGGTTCAACCACCACCACTAATGGTCACTGCTCTCTTCTGAGAGGAACGGAAGAATTAGGTATAAGGTCAAGGATGGAGAGTGAGCACAGTAACCATCTGCGCGGATTGATGAACTCCTTTGCCAATGGAAACGCTTCCATGTTTGGCAACGTGAAAGGGAATGAAAACAACCTTGGCCAGTTTCACAACGTTTCGGAGGAGCCTAAGAAGATGTCACAAAACCTTGGTTTGTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGGGTTGGAGGAATGGTCAGAAACATGAACAGTGGTGGATTTTCACAACGAGAGCAACAACACTCCATGGGAACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCACAAGCAAACCAACATTTCGGAGCCTCGACACTCTAA 1677 0.4574 MASGSSSTPFLGIRQENQTQVSQQHQSSTAASSSTTTTTSTTTTPTTMPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNLNPLGAHHLYGTNHMSLGLGAQLQNQAASANSLLSLGSAQKFEHLISPNLHHSSSFGVQSPSHSSFFMTDPNQAFQDLHQSQQQGPLFSTKQLHGLMQLPDLQGTTTNNSTSASSLSASANNANLVNLSFFPNTNTRGSIINDQFSNISGGNDQGTTTLYNSSSPVSNQVGSGLSSVFGNSSLQQDSMSPHMSATALLQKAAQMGSTTTTNGHCSLLRGTEELGIRSRMESEHSNHLRGLMNSFANGNASMFGNVKGNENNLGQFHNVSEEPKKMSQNLGLCFGGSDKLTLDFLGVGGMVRNMNSGGFSQREQQHSMGTMSPLDPKLESAQANQHFGASTL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01846 558 Gene3D Classic Zinc Finger 63 128 - -
Vian10g01846 558 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Vian10g01846 558 MobiDBLite consensus disorder prediction 1 54 - -
Vian10g01846 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Vian10g01846 558 MobiDBLite consensus disorder prediction 1 64 - -
Vian10g01846 558 Pfam Zinc-finger double-stranded RNA-binding 80 102 IPR022755 -
Vian10g01846 558 SMART c2h2final6 156 176 IPR013087 -
Vian10g01846 558 SMART c2h2final6 121 151 IPR013087 -
Vian10g01846 558 SMART c2h2final6 80 102 IPR013087 -
Vian10g01846 558 Gene3D Classic Zinc Finger 134 213 - -
Vian10g01846 558 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 528 IPR031140 -
Vian10g01846 558 FunFam protein indeterminate-domain 12-like 59 127 - -
Vian10g01846 558 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Vian10g01846 558 MobiDBLite consensus disorder prediction 521 542 - -
Vian10g01846 558 SUPERFAMILY beta-beta-alpha zinc fingers 79 176 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01846 Vian-Chr10 30287305 30291292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01846 10 228 IDZ Gene Family AT2G02070 76.364 1.20e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian10g01846 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01846 K25870 - gmx:100806198 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01846 10 30287305 30291292 Vian10g01846 10 30287305 30291292 ECH