Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01845 ATGGCAGCACCTTTTTCTTCAGCATCTCTCTTTGGAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCCACAACAACACCATCTTCCTCATCAACTCCAGCTGCACCACCACCCCAGAAGAAAAGAAGAAACCAACCTGGAACACCAAATCCAGATGCTGAGGTGATAGCACTGTCTCCGAAGACTCTAATGGCAACAAACAGGTTTATATGCGAAGTGTGCAATAAAGGGTTTCAAAGGGAGCAAAATCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCGAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAGGCTCACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTTTGTGATGCTTTGGCACAAGAAAGTGCAAGAGAGCCACCCAATTTGAGCAGTGCCATTGGCAACCAGCTATTTGGAAACAGTAACAACATGTCCTTAGGCTTATCTCAGAATTTGGGTGCTCAGATTCCTTCAATCCATGACCAAAACTCCCAACCCAGTGACCTATTGCGTTTCTGTGGTGCACCAAGGACTGGTCCATTTGACCACATTCTCCCACCAAACATAGCCTCACCCTTCAGACCCTCCTCACACCAAACCATGCAACTTCAAAACCCTCCATTCTTCATGCCAGAATCAAACCAAAACCAAAACCAAAACCAGAACTACCATGATCACCAACAAGCTTTAATCTCAAACAAGCCTTTTCAAGGAATGATACAACTATCTGACCTCAACAACACCAACACCCCTTCTGCCTCCAACCTCTTCAATCTTCCTTTTCTATCCAACCGAGGCCACCACACCCCCAACTACTCCGAGGAACACCACTTCAACCCCACAGAAGCCTCAAATTTCTTCACAGAAGGCACCATAATCGGCATCGATCACCAAACAAGCTCCGCCACTGCCCCTTCGCTTTTCAGCACCACTCTCCAAAACACCACCAACTTGTCTCACATGTCAGCAACTGCACTGCTCCAAAAAGCTGCTCAAATGGGTGCTGCAAGTTCCAGCACCAACAACAGTGCCTCCTCTCTTCTAAGAAGCTTGGCATCCAAATCTGATCACAGACCACTCATCAGTGCTGCAAACTACAGCAACATCTTGAACTCCAGCGTGCAAGAGATGATGAACCTTCCCGGCTTCGAAGCATATGATCATGGCATCACCAACAAGGAGCCAAAACTCAGCGTTGGAGGCTCTGATAGACTCACCCGGGATTTTCTTGGAGTTGCACAGCAACAACAACAACAACAACGTGGGTTTAACTTGAGCTCTTTGGAAGCAGAGACAAACAATGCGGCGGCGTCAGGTCAATCTTTCGGAGGTGGAGCAAACTTTCAGTGA 1596 0.4706 MAAPFSSASLFGIREEDQNQMKQQHSSTTTPSSSSTPAAPPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESAREPPNLSSAIGNQLFGNSNNMSLGLSQNLGAQIPSIHDQNSQPSDLLRFCGAPRTGPFDHILPPNIASPFRPSSHQTMQLQNPPFFMPESNQNQNQNQNYHDHQQALISNKPFQGMIQLSDLNNTNTPSASNLFNLPFLSNRGHHTPNYSEEHHFNPTEASNFFTEGTIIGIDHQTSSATAPSLFSTTLQNTTNLSHMSATALLQKAAQMGAASSSTNNSASSLLRSLASKSDHRPLISAANYSNILNSSVQEMMNLPGFEAYDHGITNKEPKLSVGGSDRLTRDFLGVAQQQQQQQRGFNLSSLEAETNNAAASGQSFGGGANFQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01845 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Vian10g01845 531 MobiDBLite consensus disorder prediction 1 58 - -
Vian10g01845 531 Gene3D Classic Zinc Finger 52 121 - -
Vian10g01845 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 503 IPR031140 -
Vian10g01845 531 MobiDBLite consensus disorder prediction 12 34 - -
Vian10g01845 531 SMART c2h2final6 73 95 IPR013087 -
Vian10g01845 531 SMART c2h2final6 149 169 IPR013087 -
Vian10g01845 531 SMART c2h2final6 114 144 IPR013087 -
Vian10g01845 531 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Vian10g01845 531 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Vian10g01845 531 FunFam protein indeterminate-domain 12-like 52 120 - -
Vian10g01845 531 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Vian10g01845 531 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Vian10g01845 531 Gene3D Classic Zinc Finger 127 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01845 Vian-Chr10 30274976 30279464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01845 10 496 IDZ Gene Family AT2G02070 48.080 1.06e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian10g01845 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01845 K25870 - gmx:100818072 746.503