Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01844 ATGGGTAGTTGTGGAAGGGAAGGTGTAGTGAGACAGTACATAAGATCAAAAGTCCCTCGTTTAAGATGGACCCCTGAACTGCATCGTTGCTTTGTTTATGCCATTGAAACTCTTGGAGGTCATCACAAGGCTACTCCTAAGCTTGTTCTTCAGTTGATGGATGTTAAAGGGCTGACAATTTCACATGTCAAGAGCCATCTGCAGACAAGACTTCCACCCAACATAGAAAACAACACGATGATGAAGTGGGTGATGTTGGTTTCTACTCTTGTTTCAAATCCATTGGAAAAGAATCTGATTCCCAACCCAGCTGCAAGCATGGCTGAGCAGAAGGGAATAAAGAAGATTTGTGCTGGTTCAATATTGCAGACTAAACCCCTTTCCACAACTTTTCTTCCCATGCTACCAAGCCAAGCATCAGATTTTCTCCAGGTTGCCTACTTAAATGATGAACAGGGTTTGAATGAAGTTGAGAAGAGTTGTAGGGTAGAAGCAGAGGATGAAGACGACATGGGAGGTTGTGAGTTGTCACTGTCCATCTCATTGCCAAGACCACATCCTTCTTCTCAGAGAAGTAATGCTTCTTCAGTCAGCGATATCAGTGAGGCCTTTTCATTGTGCCCTAAGTTTAACAACAACAACAACAACTACATGGGATGTTCTACTTCTTCTAATGTTTCAAACAAAGTTAATGTCGACCTATCTTTGGCCATTTGA 717 0.424 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQTRLPPNIENNTMMKWVMLVSTLVSNPLEKNLIPNPAASMAEQKGIKKICAGSILQTKPLSTTFLPMLPSQASDFLQVAYLNDEQGLNEVEKSCRVEAEDEDDMGGCELSLSISLPRPHPSSQRSNASSVSDISEAFSLCPKFNNNNNNYMGCSTSSNVSNKVNVDLSLAI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01844 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Vian10g01844 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 112 IPR046955 GO:0003700
Vian10g01844 238 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 68 IPR006447 GO:0003677
Vian10g01844 238 MobiDBLite consensus disorder prediction 174 195 - -
Vian10g01844 238 SUPERFAMILY Homeodomain-like 17 69 IPR009057 -
Vian10g01844 238 Gene3D - 18 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01844 Vian-Chr10 30229448 30233875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01844 1 68 G2-like Transcription Factor Family AT1G14600 72.603 3.40e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian10g01844 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01844 10 30229448 30233875 Vian10g01844 10 30229448 30233875 ECH