Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01840 ATGGAAAAGGTGGCGGCGCCTCCGATTCTGATGCAGCGAAAGCGCGATCTGTCGTACGGCGTCGTTGCGGGGAGTCCGAGCGAGAGCTGGAAGTGGGAGTGGGACAGCGTGCGGTTCGCGGGGAAGCCTCCGAGGGACGACGTCGTGTTCGAGGAGGAGAGCGTTGCGGCGGCGGCTCCTCTGCAGCTGAACCTCGCGGGGAGGGTGAGCGGCGGTGGTAACAAGAGAGTGCGCTCGGGGTCGCCCGGAACGGCGACGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACAGGAGGCACAAGGTGTGCGAGGCGCATAGCAAAGCCTCCAAGGCGCTTCTTAGCAACCAAATGCAAAGGTTTTGTCAGCAGTGTAGTAGGTTTCACCCGCTGTCCGAGTTTGATGAGGGGAAACGGAGTTGCCGCCGTAGACTCGCTGGACACAACCGCCGCCGGAGGAAAACGCAGCCGGAGGATGTTTCTTCCGCCACGCAGGCCCCCGCCGCCGCCGTCGCAGCAGCAAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCCGGAGCTTCGCAGGGAAAATTTGAAGAAAGATCACAAGTTCCGGATAGAGAGCAGCTTGTGCAGATTCTCAACAGGATACCTTTGCCTGCGGATCTTGCAACCAAGTTGCGGGATGCTGGTAATGTCAACGGGAAAAAGGATCATGTACAATCGGAGACACCATCCTCCTATCACCATCATGACCAACTGAACCACACCCCAGCTGCCCCATTAACTATGGACTTACTTGCTGTTCTTTCCACGAGTCTGTCTGGGTCTGGCCCTGATGCCAATGCGTCCCCCTCTCAAAATCGTAGCTGCAGCAGTGATGGCGGTAGTGTTAAATCTAGGAGTAGTGCTGATCAGACGAGACAACAGCACTTCTTTTCAGTTGGCGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTTGAAGATTCAGACTGCCAGGAGGATGTTAGAGTTAATTTACCGCTGCAACTCTTTAGCTCCTCCCCAGAAGAGGACAGCTTGCCTAAACTTGCATCTTCAAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCAGAAGAGAGGTCACCATCGTCTTCTCCTCCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGTGCTACAGGTCTAAAGCCGGAGAGCATCTCTTCTGGAAGAGGAGTTAATTCAAACAAGGAAGCTAGCCAAAGTCATAGTTGTAATATCTCTCTCGATCTATTTAAAGGGTCAAATAAAAGGATCCAACAACCTAGTTGGCTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGTAGAATAATGTTTAAACTATTTGACAAGCATCCAAGCCATTTCCCAGAAACATTGCGAGCACAGATTTACAGTTGGCTTTCTAATAGGCCATCCGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTGTGCTGCCTGGGAGAAACTAGAGGAAAACTTCCTCCAACATGTTCATTCTTTAATTCAAAATTCAGATTCTGACTTTTGGAGAAGTGGAAGGTTTCTAGTACATTCTGGCAGTCAATTGGCTTCACACAAAGATGGGAAGGTACGCATATGCAAACCATGGAGAACGTGGAAGTCGCCAGAGTTGATATCTGTTTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGCAGAAACCTGTCAACTCCTGGCACAAAGATCCACTGTACGGGTACTGGCTCTTACTCATCAGCGGAAGTCATCAGATCTTCATATCCTGGTGTGGTGTATGATAATATAAAGTTAAGTGGTTTTAAAGTTCAGGATGTTTCACCCGGTGTTGTGGGTCGCCTTTTTATTGAGATTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCCAATGAGACCATTTGCGAGGAATTGAGACCACTTGAGTCTGAATTTAACGAGGAGGAAAAAATATGCGATGCCATTTCAGAAGAGCATGAACATCATTTTGGAAGGCCAAGATCAAGGGAGGAGGCTTTGCATTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGGTTCTCATATATGCATGAGGTTCCCTGTTATTCGCTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGTATGGTAGTCAAAACCCTTCTCGATGTACTGGTTGATAAACACTTGCAAGGGGAGTCGTTGTCAACAGGGTCAGTGGAAATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGAACATAGGCATGGTTGATTTGCTCATTCACTATTCTTTACCAAACAAAAATAGTACTTCCAGGAAATATGTATTTCCTCCTAATCTTGAGGGTCCTGCTGGTATTACACCCTTGCACTTGGCAGCATGCACGTCTGGTTCTGAGGGTGTAGTTGACTTTTTAACAAGTGACCCACAGGAGATTGGCTTGAAGTGCTGGGAATCCCTTGTGGATGCTAACGGGCAGACTCCACATGCGTATGCTATGATGAGGAATAATAACTCTTATAATGTGCTGGTTGCCCGTAAACTTGCTGATAGACGAAGGGCTGAAATTTCAGTAACAATTGAGAATGAGATAGAGCAAGCTTCTCTGAGGGTAGAGCTTAACCAAAAGCAAAGTAACCTACTCAAACGAGGTCAGAGTTCTTGTGCCAAGTGTGCGACTGCAGAAATTCGCTACCACAGAAGATTTTCAGGTTCACACGGTTTGATTCACCGCCCCTTTATTTATTCAATGCTAGCCGTTGCTGCAGTTTGTGTATGTGTTTGTGTGTTCTTCCGTGGACGCCCTTGCGTAGGCTCAGTTGCTCCCTTCAGTTGGGAAACCCTGGATTTTGGCACTATGTAA 3036 0.4756 MEKVAAPPILMQRKRDLSYGVVAGSPSESWKWEWDSVRFAGKPPRDDVVFEEESVAAAAPLQLNLAGRVSGGGNKRVRSGSPGTATYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLSNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVSSATQAPAAAVAAANLEIFNLLTAIAGASQGKFEERSQVPDREQLVQILNRIPLPADLATKLRDAGNVNGKKDHVQSETPSSYHHHDQLNHTPAAPLTMDLLAVLSTSLSGSGPDANASPSQNRSCSSDGGSVKSRSSADQTRQQHFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEEDSLPKLASSRKYFSSDSSNPAEERSPSSSPPSPPVVEMQFDLQGGATGLKPESISSGRGVNSNKEASQSHSCNISLDLFKGSNKRIQQPSWLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPETLRAQIYSWLSNRPSDMESYIRPGCVVLSLYASMSCAAWEKLEENFLQHVHSLIQNSDSDFWRSGRFLVHSGSQLASHKDGKVRICKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYSSAEVIRSSYPGVVYDNIKLSGFKVQDVSPGVVGRLFIEIENGFKGNSFPVIIANETICEELRPLESEFNEEEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYMHEVPCYSLDRFKFVLTFAVERNCCMVVKTLLDVLVDKHLQGESLSTGSVEMLNAIQLLNRAVKRKNIGMVDLLIHYSLPNKNSTSRKYVFPPNLEGPAGITPLHLAACTSGSEGVVDFLTSDPQEIGLKCWESLVDANGQTPHAYAMMRNNNSYNVLVARKLADRRRAEISVTIENEIEQASLRVELNQKQSNLLKRGQSSCAKCATAEIRYHRRFSGSHGLIHRPFIYSMLAVAAVCVCVCVFFRGRPCVGSVAPFSWETLDFGTM 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01840 1011 FunFam Squamosa promoter-binding-like protein 14 81 151 - -
Vian10g01840 1011 Gene3D - 755 946 IPR036770 -
Vian10g01840 1011 MobiDBLite consensus disorder prediction 279 424 - -
Vian10g01840 1011 SUPERFAMILY Ankyrin repeat 758 904 IPR036770 -
Vian10g01840 1011 MobiDBLite consensus disorder prediction 236 254 - -
Vian10g01840 1011 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Vian10g01840 1011 Pfam SBP domain 90 163 IPR004333 GO:0003677
Vian10g01840 1011 MobiDBLite consensus disorder prediction 345 381 - -
Vian10g01840 1011 MobiDBLite consensus disorder prediction 279 334 - -
Vian10g01840 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 47 803 IPR044817 GO:0003677
Vian10g01840 1011 MobiDBLite consensus disorder prediction 153 173 - -
Vian10g01840 1011 MobiDBLite consensus disorder prediction 236 260 - -
Vian10g01840 1011 Gene3D - 80 151 IPR036893 GO:0003677|GO:0005634
Vian10g01840 1011 MobiDBLite consensus disorder prediction 410 424 - -
Vian10g01840 1011 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01840 Vian-Chr10 30198374 30203335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01840 3 1011 SBP-box Gene Family AT1G20980 52.498 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian10g01840 SBP 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01840 - - gmx:100819004 1660.2