Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01816 ATGGCTCGTCCTTGTTTCCACAAGCTTGTTCTCTCCACCACTCTTCAATCCAGACAACTGAGGATTCCGGATATTTTTCTGAGGAAATATGGGACCCAGCTTTCTACAGTTGCTACCCTCACTGTTCCTGATGGTAGTATTTGGCGTATAGGATTGAAGAAAGCTGACAGCAAAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTCCAACGGTACTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCCTTTATTGTTCATATTTTTAATTTGAGTACCTCTGAGATAAATTATCAATCGGCTATGAGAAATCATATGGAAGGACCCTGCTTTGTCAATTACAATCATATTTTCGAGGAAATGGAAGACATAGATTCCATTGATTTGTCAGATTTGTCACCTTCGTATCTTACATCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTCTGCAGAATTTGTTCAATGGTGGCTCAAAACTGAATCGTGTAAACTGGGGTGATGGTGGGAGTTCTTACTCTTCTAAGAGTGCCAATTCACAAGGTAGCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACCGATGAATTGAAGTTGCGTTATTCTAACGAGGAAGCAGTCAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTGCGACCCTCCTATTTATATAGAGGATGCATAATGTACTTGCCTTCTTGCTTTGCGGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAGTTGTCCAATGGCAGACAGTGGTCGGTTCGCTGTCTCTACAGAGGAGGTCGAGCCAAGTTAAGCCAAGGATGGTTTGAATTCACCGTGGAGAACAATCTGGGGGAGGGTGATGTATGTGTGTTTGAGCTCCTTAGAATAAAGGAAGTTGTGCTGCAAGTTACTGTCTTTCGCGTAACTGAAGATGCAAGCTTGTTGAACTCTCCTCCTGTGCAGCAGCTGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCATTTGCAGCATCGCGTCAGCAGTACAGTGAAATTGATTAGAAATTAG 1305 0.4261 MARPCFHKLVLSTTLQSRQLRIPDIFLRKYGTQLSTVATLTVPDGSIWRIGLKKADSKIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEINYQSAMRNHMEGPCFVNYNHIFEEMEDIDSIDLSDLSPSYLTSGAMQNKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSSYSSKSANSQGSQSTRDIGVQFNAVEFKRSTDELKLRYSNEEAVNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRIKEVVLQVTVFRVTEDASLLNSPPVQQLSQNMSHTKLLNPHLQHRVSSTVKLIRN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01816 434 Gene3D - 1 99 IPR015300 -
Vian10g01816 434 SUPERFAMILY DNA-binding pseudobarrel domain 291 392 IPR015300 -
Vian10g01816 434 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Vian10g01816 434 Gene3D - 275 395 IPR015300 -
Vian10g01816 434 CDD B3_DNA 4 96 IPR003340 GO:0003677
Vian10g01816 434 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Vian10g01816 434 MobiDBLite consensus disorder prediction 155 205 - -
Vian10g01816 434 MobiDBLite consensus disorder prediction 233 260 - -
Vian10g01816 434 MobiDBLite consensus disorder prediction 233 250 - -
Vian10g01816 434 Pfam B3 DNA binding domain 301 391 IPR003340 GO:0003677
Vian10g01816 434 Pfam B3 DNA binding domain 7 96 IPR003340 GO:0003677
Vian10g01816 434 CDD B3_DNA 296 391 IPR003340 GO:0003677
Vian10g01816 434 PANTHER B3 DOMAIN-CONTAINING 3 382 - -
Vian10g01816 434 SMART B3_2 6 98 IPR003340 GO:0003677
Vian10g01816 434 SMART B3_2 298 393 IPR003340 GO:0003677
Vian10g01816 434 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01816 Vian-Chr10 29998187 30003371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01816 1 394 B3 DNA Binding Superfamily AT3G18990 50.746 8.72e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian10g01816 B3 5.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01816 - - gmx:100806715 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01816 10 29998187 30003371 Vian10g01816 10 29998187 30003371 ECH