Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01805 ATGATTCCCGTTCCTCATGAAGAACCAAGCTTAGATTTCAGACCCTCTTTTGTTAACAATATCGTCACTGATTTTCTCTCCCATCTTTCCTCCATCCCAAATGCCTGCAACAGGATGTCCTTGCTCCAGGAATTTCTCACCAGATTGGAACTTGAATTGGTCAAGATCCAAGCGTTCAAACGCGAGCTTCCTCTCTGCATGTTCCTCTTAAACGATGCTATTTCAGCTTTGAAGGAGGAGCTAGCGAAATGCAGAGCTTTCAAGGCTGAGCCTGTTTTGGAGGAGTTCATTCCTCTGAAGAGAGAGTATGAGGAGAAGGAGGATAATGAGAAGGAAGAGGAATGCAGAAACAAGAATGATTGGGTGAGTTCTTTCCAGCTTTGGAACACAGAAGATGAAGCTTATAATAGGAGCAAGGCATGTAGATTGGAGCAGAAACAAAAGAAGAGTAAAGGAGAAGAAAGAAAATCTATGGAAAAGGACTATTTCCAACATGATAGTAATAGAAATGTAGAGAGAGGATTTGTTATGCCTTTGTCCACTTACCTTGCAACAGAGGAAGAATGTGTTGTGGATGGACTTTCTCTCAAGACACCTGCAACTGCAGTGAAAAACACAAGAGAGGGACGTGGTTCCAGAATCAGCTCTTGCAGGGTGGTTTCCTCCGCTCCTTCGCCCATGCTGCTGCCGCAAAGTGGCCGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGCTTTGTTAAGGCATTAGAGGAGCTTGGAGGCTCTCAAGCAGCTACACCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGACGAAGTAAAGAGTCATTTACAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCTACAGCCGCAAATTGTAGTATCTCTGGTGCAGATCTTGGAGGCTTGTGGATGCACAAAGAATCATTGAAGGGTACAAGTTATTGTTCTCCTCAAGGGCCTCTCCAATTCGCTACACAATCTGGGGACACGACATCCACAACAGAAGGTGACAACATGATAGATGATGATGTAAAATCGGACTTATAA 1077 0.4475 MIPVPHEEPSLDFRPSFVNNIVTDFLSHLSSIPNACNRMSLLQEFLTRLELELVKIQAFKRELPLCMFLLNDAISALKEELAKCRAFKAEPVLEEFIPLKREYEEKEDNEKEEECRNKNDWVSSFQLWNTEDEAYNRSKACRLEQKQKKSKGEERKSMEKDYFQHDSNRNVERGFVMPLSTYLATEEECVVDGLSLKTPATAVKNTREGRGSRISSCRVVSSAPSPMLLPQSGRKQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRVPAATAANCSISGADLGGLWMHKESLKGTSYCSPQGPLQFATQSGDTTSTTEGDNMIDDDVKSDL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01805 358 SUPERFAMILY Homeodomain-like 233 293 IPR009057 -
Vian10g01805 358 MobiDBLite consensus disorder prediction 330 358 - -
Vian10g01805 358 MobiDBLite consensus disorder prediction 330 347 - -
Vian10g01805 358 FunFam Myb family transcription factor 234 292 - -
Vian10g01805 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 292 IPR017930 -
Vian10g01805 358 Pfam Myb-like DNA-binding domain 237 288 IPR001005 -
Vian10g01805 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 235 290 IPR006447 GO:0003677
Vian10g01805 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 22 348 IPR044787 GO:0003700|GO:0006355
Vian10g01805 358 Gene3D - 234 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01805 Vian-Chr10 29872504 29874442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01805 8 317 G2-like Transcription Factor Family AT2G03500 38.507 7.19e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian10g01805 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01805 - - vra:106776390 670.618