Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01787 ATGGATCACACCCATTCCCACATCCACAGAGAGCGAGTCCGTCGCGGCACTCGCAGGTTACGTGGCTCCTCTTCCTCTCCATCTCTTAGGGTTTTCGACCAATCGCAACCGAACCACCACCGACCTCCCTGCACTGATTTCGACGTCGCCTACTTCCATTCCTACGCTCACCTCGGTATCCACCAGGAGATGATAAAGGATCGCGTGCGTACTGAAACTTACAGGGAAGCAATCATGCAGCACCAGAGTTTCATTGCAGGCAAAGTTGTGGTTGATGTCGGATGTGGTACTGGAATCCTTTCTATATTTTGTGCTCAGGCTGGTGCAAAGCGGGTGTATGCAATTGATGCCAGTGACATTGCCCTGCAGGCAAATGAGGTTGTGAAAGCCAATAACTTGTCTGATGTTGTTGTTGTATTGCATGGACGAGTCGAGGATGTTGAAATTGATGAAGAGGTGGATGTTATAATTTCGGAATGGATGGGCTATATGCTTCTATATGAGAGTATGCTTGGAAGTGTTATTAATGCTAGAGATCGATGGCTCAAACCTGGAGGTCTTATTCTTCCTTCAAGTGCAACGTTGTACATGGCTCCTGTCACGCATACGGACAGATACAACGACAGTGTTGACTTCTGGCGCAATGTTTATGGAATTAACATGTCTGCCATGGTACCATTAGCTAAACAATGTGCATTTGAAGAACCTTCCGTAGAGACAATAACTGGTGAAAATGTTTTGACATGGCCACATGTGGTAAAGTACATCGATAGTTATTCTGTTACCATCAACGAGTTAGAATCTGTAACAACCAAGTTTAAGTTCAATTCTATGATGCGAGCACCACTACATGGTTTTGCATTTTGGTTCGATGTTGAATTTAATGGGAATGCAATAGTATCAACCAATTACAATTCAACAACTTCATTTATTGACAATCATCAGATGAATGGTAGTCAGAGGAAAAAGCGAACAAATCCAAATGAAGCACTGGTCCTGTCCACTGCGCCTGAGGACCCTCCAACACATTGGCAGCAGACATTGATATACTTTTATGATCCCATAGAGCTGGAACAAGATCAACTAATTGAAGGTTTAGTGACATTGTCGCAAAGCAGAGAAAATGCACGATTTATGAATATTCACCTTGAATATACTTCAGGTGGTCGATCGCATGTGAAAGAGTCTGTTATGAGATGA 1200 0.435 MDHTHSHIHRERVRRGTRRLRGSSSSPSLRVFDQSQPNHHRPPCTDFDVAYFHSYAHLGIHQEMIKDRVRTETYREAIMQHQSFIAGKVVVDVGCGTGILSIFCAQAGAKRVYAIDASDIALQANEVVKANNLSDVVVVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVINARDRWLKPGGLILPSSATLYMAPVTHTDRYNDSVDFWRNVYGINMSAMVPLAKQCAFEEPSVETITGENVLTWPHVVKYIDSYSVTINELESVTTKFKFNSMMRAPLHGFAFWFDVEFNGNAIVSTNYNSTTSFIDNHQMNGSQRKKRTNPNEALVLSTAPEDPPTHWQQTLIYFYDPIELEQDQLIEGLVTLSQSRENARFMNIHLEYTSGGRSHVKESVMR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01787 399 Pfam Ribosomal protein L11 methyltransferase (PrmA) 86 161 - -
Vian10g01787 399 MobiDBLite consensus disorder prediction 20 40 - -
Vian10g01787 399 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 35 387 IPR025799 GO:0016274|GO:0018216
Vian10g01787 399 Gene3D - 192 398 - -
Vian10g01787 399 CDD AdoMet_MTases 90 189 - -
Vian10g01787 399 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 54 389 IPR029063 -
Vian10g01787 399 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 48 399 IPR025799 GO:0016274|GO:0018216
Vian10g01787 399 Gene3D Vaccinia Virus protein VP39 45 190 IPR029063 -
Vian10g01787 399 FunFam Protein arginine N-methyltransferase 6 192 397 - -
Vian10g01787 399 FunFam Protein arginine N-methyltransferase 6 44 190 - -
Vian10g01787 399 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01787 Vian-Chr10 29681851 29696420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01787 51 399 C2H2 Transcription Factor Family AT3G12270 36.538 5.68e-66 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01787 K11437 - gmx:100809174 704.131