LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian10g01782	ATGGATATTATCACTCGCCGCTTCCTTCCAATCATTTCAACTTTGCTTCTCATTCTAGTTTCTCTTTCTTCATTGGCCTCAGCGTCTCTCAAAGTGGCGTTCTACGCCTCCACGTGTCCATCTGCGGAGGAAATAGTGACAAGTACTGTAAACAAAGCCATTTCAGAAAACTCAGGCATAGCAGCTGGTCTCATAAGGATGCATTTCCACGACTGCTTTGTCAGGGGCTGCGATGCTTCCGTGTTGCTAGCATCTACCCATGGTAACCCAGCAGAAAGAGACCATTTTGCCAACAACCCAAGCTTGCGTGGGTTCGAGGTCATTGAGGACGCCAAGGCCCAGTTGGAGGCTGCATGTCCTCAAACGGTGTCGTGCGCAGACATATTGGCCTTGGCAGCAAGAGACAGTGCTCTTAAAGTGGGTGGCATAAACTACGACGTTCCAACAGGACGCAGAGACGGTCTTGTCTCCGTGGCCGATGAAGCGGCGGAGAATCTGCCTGCACCAACCCTGAGCGCCGATGAGCTTGTGAGTAGGTTTTCACGAAAGGGTTTGTCTGCAGATGAAATGGTGACACTTTCAGGAGCCCATTCCATTGGTGTGTCGCATTGTTCTTCCTTCTCTAAGCGGTTGTACTCTTTCAATGAGACCTTGCCGCAAGACCCATCAATGGACTCTTCCTACGCTGAAACCTTGAAAACAAAGTGTCCTGCGCCACCTTCCATCTCAGACCCAACCGTGTCTTTTGATCCTTCCACTCCCATTCGTTTGGACACCAAATACTACGATGGATTGATCGACCACCGAGGCTTGCTCACATCGGATCAGACGCTGTTCACCTCTCAATCCACCAGGGAAATGGGTTTTCATGGTGGATGTAGAGATTCGGATGGTTAG	897	0.5017	MDIITRRFLPIISTLLLILVSLSSLASASLKVAFYASTCPSAEEIVTSTVNKAISENSGIAAGLIRMHFHDCFVRGCDASVLLASTHGNPAERDHFANNPSLRGFEVIEDAKAQLEAACPQTVSCADILALAARDSALKVGGINYDVPTGRRDGLVSVADEAAENLPAPTLSADELVSRFSRKGLSADEMVTLSGAHSIGVSHCSSFSKRLYSFNETLPQDPSMDSSYAETLKTKCPAPPSISDPTVSFDPSTPIRLDTKYYDGLIDHRGLLTSDQTLFTSQSTREMGFHGGCRDSDG	298

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian10g01782	298	PRINTS	Plant peroxidase signature	264	281	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vian10g01782	298	PRINTS	Plant peroxidase signature	63	83	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vian10g01782	298	PRINTS	Plant peroxidase signature	188	200	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vian10g01782	298	PRINTS	Plant peroxidase signature	39	58	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vian10g01782	298	PRINTS	Plant peroxidase signature	103	116	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vian10g01782	298	PRINTS	Plant peroxidase signature	122	132	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vian10g01782	298	PRINTS	Plant peroxidase signature	248	263	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vian10g01782	298	PRINTS	Plant peroxidase signature	141	156	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vian10g01782	298	FunFam	Peroxidase	33	175	-	-
	Vian10g01782	298	Pfam	Peroxidase	47	287	IPR002016	GO:0004601\|GO:0006979\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian10g01782	Vian-Chr10	29620213	29623347	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian10g01782	8	284	Peroxidase	AT1G05260	48.571	4.36e-83	251

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian10g01782	K00430		-	gmx:100815350	457.218

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