Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01774 ATGGCTTCCTTCGTACTCATCTTCTTCTTCTTCTTCCTCTTCAATCTTCAACCCTCTTTCTCCCAACAGCAATTCTCATCCTTCAACATCTCAAACTCCCCATGGCAACCGTCTCAGAACAGAACCCTTATCTCTGCCAACAAAAACTTCACTGCAGGCTTCTTTCCCGTCCCAAACTCCGACCTTTTCATCTTTTCCATTTGGTATTCTAAAGTCCCTGTCGACCCTCTTGTGTGGAGTGACACCACCCGAGTGAACAGCTCTGGCTCCCTTGTCATCACCTCAAAATTTGAACTTCTCCTCGATGGTTCACCCTTTCAAGGAACTGCCGACACTAATGCTTCCCGACTTGATCTGAAGGACAATGGAGAGTTGGTTTTTGGGAACTGGAGCAGCTTCAAGAACCCCGCCAACACCGTTTTGCCCAACCAGAGCTTCACAGGGATTGAGCTTCTCTCCAACAATGGGAAATTCAGGTTCACCAAGTCTCAGTTTCTGGTCCTCAACTCCACCTCTGATCAGTACTATAGCACCCCGAATCCCTTTCTGAGCATGGATGATACAGGGAAAATGAGTATGCAAGGTAACTCTTTTCTCACTTCAGATTACGGAGACCCCAGGTTCAGGAAAGTGGTCCTTGATGATGATGGGAATCTCAGGATCTATAGCTTCTACCCTGACCAGAATAACCAGTGGATTGAGGTTTGGAAAGGAATATGGGAGATGTGCAAGATCAAAGGCAAATGTGGGTCTAATTCAATTTGTGTGCCTGGAGAGGATTTGAACTCTTCTACTCGTTGTGATTGCCCATCTGGGTTCACCCCAAACCAAGGCGGGGCTGAAGAGGGTTGCACAAGGAAAATCTCTCTCTCCCAAAGCACCCAATTTGTGAGGCTGGACTATGTGAACTTCACCAGTGATGGTAATCTGACCCAGATTAAAGCTGACAACTTCACCATCTGTGAGTCCGGTTGCTCAAGAGATAAAACTTGTCTTGGGTTTGGGTTCAAATATGATGGATTGGGCTACTGTGTGTGGGTGACTGGGACAAATCTTCGATTTGGGTACTGGTCACCAGGCACTGAGGCTGCCTTTTTTCTCAAACTTGATAAATCTGAGTCAACACCGTCCAACTTCATTGGCCTGACTGAGGTGATGCAAACCACATGCCCAGTGAACATAAGCCTGCCACTGCCCCCAAAGGACTCAAACACAACAGCCCGAAACATTGCCATAACATGCACACTTTTTGCTGCAGAACTCATAGCTGGGGTGGCCTTTTTCTGGTCCTTCCTGAAGAGGTACATCAAGTATAGGGACATGGCCACCACACTGGGCCTGGAGCTTCTCCCTGCTGGGGGTCCCAAGAGGTTCACCTACTCAGAAATCAAGGCTGCAACCAATGACTTCTCCAATCTCATAGGCAAAGGAGGCTTCGGAGATGTCTACAAAGGTGAGTTGCCAGACCACAGGGTGGTGGCAGTGAAGTGCCTCAAGAATGTCACAGGTGGAGATGCTGAGTTCTGGGCAGAAGTAACAATCATTGCCAGAATGCACCATCTCAACTTGGTGAGGCTGTGGGGGTTCTGTGCTGAGAAGGGTCAAAGGATACTAGTCTATGAACACATCCCCTGTGGCTCATTGGACAAGTACCTCTTCAGGGTCAACAAGTCTCACAGCAATAATAACAACCATCTTAAAGACCAATCAAGTCCAAACACACAACAGCAGAAGCCGGTTTTGGATTGGAGCATGAGATTCAGAATAGCCCTTGGTGTGGCAAGGGCTATTGCCTACTTGCATGAGGAATGTTTGGAGTGGGTTTTGCACTGTGACATCAAGCCTGAGAACATCTTACTAGGTGATGATTTTTGCCCCAAGATTTCAGATTTTGGGCTGGCCAAGTTGAGGAAAAAGGAGGACATGGTGACCATGTCAAGGAGGAGAGGCACACCAGGGTACATGGCACCTGAATGGATCACAGCTGACCCAATCACTTCAAAAGCTGATGTGTATAGTTTTGGCATGGTGCTTTTGGAGCTTGTGAGTGGAATTAGGAACTTTGAGATTCAAGAATCTGTGCTTAGGAGTGAGGAGTGGTACTTCCCAGGTTGGGCCTTTGACAAGATGTTTAAGGAGATGAGAGTGGAGGAGATTTTGGATGCACAGATTAGGAATGCTTATGATAGCAGAACCCACTTTGACATGGTTAATAGGATGGTGAAAACTGCCATGTGGTGTCTTCAAGATAGACCTGAGTTGAGGCCTACTATGGGCAAGGTGGCCAAGATGTTGGAAGGGACTGTGGAGATCCTTGAGCCCAAGAAGCCCACCGTTTTCTTCCTTGGAGAAGAGTAG 2358 0.4754 MASFVLIFFFFFLFNLQPSFSQQQFSSFNISNSPWQPSQNRTLISANKNFTAGFFPVPNSDLFIFSIWYSKVPVDPLVWSDTTRVNSSGSLVITSKFELLLDGSPFQGTADTNASRLDLKDNGELVFGNWSSFKNPANTVLPNQSFTGIELLSNNGKFRFTKSQFLVLNSTSDQYYSTPNPFLSMDDTGKMSMQGNSFLTSDYGDPRFRKVVLDDDGNLRIYSFYPDQNNQWIEVWKGIWEMCKIKGKCGSNSICVPGEDLNSSTRCDCPSGFTPNQGGAEEGCTRKISLSQSTQFVRLDYVNFTSDGNLTQIKADNFTICESGCSRDKTCLGFGFKYDGLGYCVWVTGTNLRFGYWSPGTEAAFFLKLDKSESTPSNFIGLTEVMQTTCPVNISLPLPPKDSNTTARNIAITCTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEHIPCGSLDKYLFRVNKSHSNNNNHLKDQSSPNTQQQKPVLDWSMRFRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGIRNFEIQESVLRSEEWYFPGWAFDKMFKEMRVEEILDAQIRNAYDSRTHFDMVNRMVKTAMWCLQDRPELRPTMGKVAKMLEGTVEILEPKKPTVFFLGEE 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01774 785 Pfam Protein kinase domain 472 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01774 785 FunFam Serine/threonine-protein kinase 543 776 - -
Vian10g01774 785 ProSiteProfiles PAN/Apple domain profile. 284 370 IPR003609 -
Vian10g01774 785 PIRSF SRK 1 785 IPR024171 GO:0004674
Vian10g01774 785 CDD EGF 243 274 - -
Vian10g01774 785 PANTHER OS07G0415500 PROTEIN 6 780 - -
Vian10g01774 785 ProSitePatterns Protein kinases ATP-binding region signature. 474 496 IPR017441 GO:0005524
Vian10g01774 785 ProSiteProfiles Protein kinase domain profile. 468 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01774 785 FunFam S-receptor-like serine/threonine-protein kinase 440 542 - -
Vian10g01774 785 Pfam S-locus glycoprotein domain 203 276 IPR000858 GO:0048544
Vian10g01774 785 SMART serkin_6 468 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01774 785 SUPERFAMILY Protein kinase-like (PK-like) 443 765 IPR011009 -
Vian10g01774 785 Gene3D Transferase(Phosphotransferase) domain 1 546 776 - -
Vian10g01774 785 Gene3D Phosphorylase Kinase; domain 1 442 542 - -
Vian10g01774 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vian10g01774 785 CDD STKc_IRAK 474 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01774 Vian-Chr10 29492265 29494622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01774 456 777 Receptor kinase-like Gene Family AT4G18250 39.818 2.96e-75 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian10g01774 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01774 - - gmx:100775518 1310.82