Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01764 ATGGATCAACCAAATCCACCACTCTCCTCCAAACCCAAACTCGCTTCAGAGTCGCCGCTCCACCGCCTCACTCCCACCTCTAACCGTTTCCGCAGCTCCCAGCTTCTCAGGGAGAGAGAAAGCAAGGGTGAAGGGGAAAAGGAGGATCCGAGTGCCTCACGGAAGGTTCTGAAAGCTGACCGCGAGAAACTCCGTAGGGATCGACTCAACGAACACTTCCAAGAGTTGGGAAACACGTTAGATCCGGATAGACCCAAGAATGACAAGGCAACTATCCTTACTGAAACCGTCCAAATGCTAAAGGACTTAACTGCTGAAGTTAATAGGCTTAAAACTGAACATAAAGCACTTTCTGAAGAGTCACACGAATTAATGCAGGAAAAAAATGAACTCAGAGAAGAGAAGACCTCTCTTAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATGGACTGCAATTGACCATTCGGTTGTCATTAGTCCACCTTACTCTTATCCACTTCCTATACCTATCCCTCCTGCTCCAATTTCCATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTGGTCCCATTCCTAGTCCTTGTTCAATGTATGTCCCATATTCTACTCCAACTAACAACCCAGTTGATCCACCATCTGTGCTTTATGCTTCCACATCCCATTTGTCGAACCAAAGGGAATCTTTTAGCAAGTCATCGGGTGATAGAAGGCCTAGTAGTGATGCTGAACGATGTAGCGAGTCTCACGATGTGGCCACAGAACTTGAACTTAAGATGCCTGGATCATCATCTACACAACAAGAGTGCACTTCTGGAGGAAGGAAGGGCAAGCATTCAGTGATAAGAGATAGAACCATCATAGGTGGGAGTTCTGGGAGTGCTTCAAGCCGTTATTCTTCTTCTCAAGGACTTCAAGATAGCTCCAACAGTAAGGCAAAAGAGTTTGCATTTAGGATGGGTAAAACAATTGAGTTGTATGGATTTCCTAATTATGTGAAAACGGCTGATGTGAAGATATTTGTGGAGAATTATACTGGTAAAGGAAGTATCGCAGTTATGAAGCTAAGACATGGCAAAGGTCGGGCTCGAAGAGCATTCGCTATTATTCAATTCATCACAGAAGACTCTGCTACACATATGGTATCGATGGCCCTTTCAAGAGGATTGCGGTATGGAACCGCTTATTTAAAAGCTCGGGAAATGGAGAGTGATATTGATCGAAAACTAAGAATGGATTTGCCTGGTTTGGAAGGTGTGAAACTGTATTTTGGCTGCCAGATATCGAAAGGAGGATTTTCTGTTTTGGAGACAATTCCGGATTCCAGTTTAAATTTTGGGAGTGGAAAGAGAAAGGTGGAGCTGAATTTTTTGTATAACCTCGTGCAATACAAACTTGAGCTTTCATACGAGAACATTTGGAAGGTTGAGCTGCTTCGACCACGGAATAAAACTGCACGTTATCTCCTTGTTCAGTTACTTGGTGCTCCCCGGATATTTGAGTGCGACGTGCATACATCGGCAGATGTATCTGACAGTGTATTTGATAAATCTTCGTACAACTACAAAAAATATATCCTTGATGAGGAATGGACCAGAACAATAGATTTCACTAAGGATAGTTGTATTGGGCAGTCCTCCGCCATATGTCTGGAGTTTCCTAGTGGCCAGAATTTACCAAATTTCAAGGATATCTTTGCTTATTATGAGCAAAGTGAACGGCAATACACATTACATCCAGGGGTTCCCTTTTCTCAAAATTGGGGTCTTGTCCCCATTGTTGCTCCCCAAGGTGTTGAAATACCATTTGACATCTTGTTTAAAGTCAATTCATTGGTTCAGCATGTATGTCTAGCGGGACGTGCACTTAATGATGACTTCTATCACTGGGTTGATCCGCGCACAATGCCGCTTGATTTTATTAAAAATGCTTTAGAAAAGATGTACTACTCTAAGGAATTCTGTTATGATCCCACAAAGTGGTTTACTGATCAGTACAAAAGGTACCTTAAATCAAATTCAAAGAATTGTCCTCGGTGGCCTGCAATGTCTTTGGATAAAGGGTTGGTATATGTTCGCAGGGTTCAGATCACACCTTGCAAAGTTTACTTTTGTGGTCCAGAGGTTAATGTCTCAAATCGTGTTCTCCGTCACTTCCATGAACATTTGGACAACTTTATACGTGTTTCATTTGTCGATGAGGAGTTGGATAAACTGTTTTCAACTGAATTATCATCCCGTGCACAGAACAAGAAAACTGACTTGTACACGAGAATTCTTGACATCCTTAAAAATGGCATTGTTATTGGCGATAAGAAGTTTGAATTTCTAGCATTCTCATCAAGTCAGTTGCGGGAAAATTCTCTCTGGATGTTTGCTCCTACAGGAAAGTACACTGCCGCATCCATAAGGAGTTGGATGGGAAATTTTAGCAAGATTAGGAATGTTGCAAAGTATGCTGCTAGGCTGGGACAATCTTTTGGTTCATCTACTGAAACTCTAAGCGTCCCTAGGAATGAAATTGAAATTATTCCGGATGTGAGCAGGACTTCTGATGGAAATGAATATGTCTTTTCTGATGGTATTGGGAAAATATCTCTTAAATTTGCCAGGAGCGTGGCTAGAAAATGCGGCTATCATGGCACTCCATCTGCCTTTCAGATTCGTTACGGAGGTTACAAAGGAGTTGTAGCTGTTGATCCCACATCACGTTTTAAGTTATCACTGAGGAATAGCATGCGGAAGTATGATTCAGATAACACGAAGTTAGATGTTTTGGGTCGTAGTAAGTTTCAGCCGTGTTATCTGAATCGGCAGTTGATTACTCTCTTATCCACTCTTGGCATCAATGATGGTGTTTTTGAGAAAAAACAAAGAGAAGCTATGTATCAACTAGACACTATACTAAAAGATTCATTGAAGGCACAGGAAGTTCTGGACTTAATGCCTGCTGGGGAGATTACCAATGTTCTGAAGAAGCTCCTCATCTGTGGCTACAAACCTAGTGAGGAACCATTCCTTTCAATGATGCTGCAAATATTTAGGGCATCAAAACTGTCAGATTTGCGACTCAAATCCAAGATCTTTATTCCGAAGGGAAGAGCAATGATGGGATGTCTAGATGAAACTAGTACCCTGGAATATGGTCAAGTATTTGTGCAGATTTCCAACAATGGGCTGCGGGATCGATCTGATGATTCTTTACCCTATAATTTGCCAAAAAAATACCCTATTACAGGTAAGGTGGTAGTAACTAAAAACCCTTGCTTGCACCCTGGTGATGTGCGTGTTTTAGAAGCTGTGGATGTGCCAGATTTGCACCACATGGTGGACTGTGTTGTTTTCCCTCAAAAAGGACCAAGACCTCATCCAAACGAGTGTTCGGGAAGTGATCTGGATGGAGATATCTACTTTGTTTGTTGGGACCCTGAATTGATTCCTTTCCGCCAAACCGAACCAATGGATTATACTCCTTTCTCAACTGTAGAACTGGATCATGATGTGACAATTGCGGAGGTTGAGGAGTATTTTACCAATTACATGGTCAATGACAGTCTGGGAATAATTGCCAATGCACACACTGTCTTTGCTGACAGACAACCAGAAAAAGCCATGTCTGCAGAATGTCTTAAGCTTGCAAAGCTGTTTTCAACAGCAGTCGACTTTCCAAAAACTGGTGTTCCTGCTGTTATTCCTCGTGCACTGTATGTCAAAGAATATCCGGACTTCATGGAGAAGTCTAACAGAGAAACCTATATATCACCTAATATAATAGGAAAGCTCTATAGGGAAGTTATGGAAACAATTTCATCAAGTGATGGTGGCTATGTTTCATCCTTCACCCAAGAGGTCGCGAGAAGGTCTTACGACTTTAACATGGAAGTTGATGGCTTTATGGATTATGTTGATGATGCTTTCTATTACAAAACCAATTATGACTACAAGTTGGGAAATCTGATGGATTACTATGGCATCAAAACTGAAGCTGAAATCCTCAGCGGTAATATCATTAAACTGTCAAAATCCTTCAACAAAAGGAGGGATGCAGAAGCAGTAAATCAAGCTATGACGTCCCTAAGGAAAGACGCCCGGTCCTGGTTCAATGAGGGCAGAAATGGTGTGGATTCTAGAAATGGTGATGATAAATATGCAAAAGCTTCTGCTTGGTACCATGTTACTTACCATCCAAGCTATTGGGGTCGCTACAACCAAGGGATGGGTAGGGATCATTATCTAAGTTTCCCATGGTGTGTTTTCCCTCAGCTTCTCCAAATCAAGAAAAAGGTTTCCAATAGAAGGTACTCTTAG 4347 0.4184 MDQPNPPLSSKPKLASESPLHRLTPTSNRFRSSQLLRERESKGEGEKEDPSASRKVLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETVQMLKDLTAEVNRLKTEHKALSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRIMFPWTAIDHSVVISPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPGPIPSPCSMYVPYSTPTNNPVDPPSVLYASTSHLSNQRESFSKSSGDRRPSSDAERCSESHDVATELELKMPGSSSTQQECTSGGRKGKHSVIRDRTIIGGSSGSASSRYSSSQGLQDSSNSKAKEFAFRMGKTIELYGFPNYVKTADVKIFVENYTGKGSIAVMKLRHGKGRARRAFAIIQFITEDSATHMVSMALSRGLRYGTAYLKAREMESDIDRKLRMDLPGLEGVKLYFGCQISKGGFSVLETIPDSSLNFGSGKRKVELNFLYNLVQYKLELSYENIWKVELLRPRNKTARYLLVQLLGAPRIFECDVHTSADVSDSVFDKSSYNYKKYILDEEWTRTIDFTKDSCIGQSSAICLEFPSGQNLPNFKDIFAYYEQSERQYTLHPGVPFSQNWGLVPIVAPQGVEIPFDILFKVNSLVQHVCLAGRALNDDFYHWVDPRTMPLDFIKNALEKMYYSKEFCYDPTKWFTDQYKRYLKSNSKNCPRWPAMSLDKGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFHEHLDNFIRVSFVDEELDKLFSTELSSRAQNKKTDLYTRILDILKNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTGKYTAASIRSWMGNFSKIRNVAKYAARLGQSFGSSTETLSVPRNEIEIIPDVSRTSDGNEYVFSDGIGKISLKFARSVARKCGYHGTPSAFQIRYGGYKGVVAVDPTSRFKLSLRNSMRKYDSDNTKLDVLGRSKFQPCYLNRQLITLLSTLGINDGVFEKKQREAMYQLDTILKDSLKAQEVLDLMPAGEITNVLKKLLICGYKPSEEPFLSMMLQIFRASKLSDLRLKSKIFIPKGRAMMGCLDETSTLEYGQVFVQISNNGLRDRSDDSLPYNLPKKYPITGKVVVTKNPCLHPGDVRVLEAVDVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPFRQTEPMDYTPFSTVELDHDVTIAEVEEYFTNYMVNDSLGIIANAHTVFADRQPEKAMSAECLKLAKLFSTAVDFPKTGVPAVIPRALYVKEYPDFMEKSNRETYISPNIIGKLYREVMETISSSDGGYVSSFTQEVARRSYDFNMEVDGFMDYVDDAFYYKTNYDYKLGNLMDYYGIKTEAEILSGNIIKLSKSFNKRRDAEAVNQAMTSLRKDARSWFNEGRNGVDSRNGDDKYAKASAWYHVTYHPSYWGRYNQGMGRDHYLSFPWCVFPQLLQIKKKVSNRRYS 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01764 1448 Pfam RNA dependent RNA polymerase 710 1278 IPR007855 GO:0003968
Vian10g01764 1448 MobiDBLite consensus disorder prediction 235 323 - -
Vian10g01764 1448 MobiDBLite consensus disorder prediction 272 287 - -
Vian10g01764 1448 Coils Coil 93 148 - -
Vian10g01764 1448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 124 IPR036638 GO:0046983
Vian10g01764 1448 MobiDBLite consensus disorder prediction 1 68 - -
Vian10g01764 1448 PANTHER RNA-DEPENDENT RNA POLYMERASE 334 1440 IPR007855 GO:0003968
Vian10g01764 1448 MobiDBLite consensus disorder prediction 33 68 - -
Vian10g01764 1448 MobiDBLite consensus disorder prediction 300 323 - -
Vian10g01764 1448 Pfam Helix-loop-helix DNA-binding domain 54 103 IPR011598 GO:0046983
Vian10g01764 1448 CDD bHLH_AtILR3_like 58 132 - -
Vian10g01764 1448 Gene3D - 52 137 IPR036638 GO:0046983
Vian10g01764 1448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Vian10g01764 1448 MobiDBLite consensus disorder prediction 244 268 - -
Vian10g01764 1448 SMART finulus 59 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01764 Vian-Chr10 29391577 29406740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01764 52 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 57.391 1.59e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g01764 RdRP 1.1e-192 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01764 K11699 - gmx:100811587 1688.32