Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01756 ATGGCAGAGCGCGGAGGCGGTGATCGCGGCGGTTTCGGGCGTGGCTTCGGCGGGCGCGGGCGTGGTGGTGATAGGGGTCGTGGACGCCGCCGAGGGCCTCGCCGTGAGGAGGAGGAGAAGTGGGTCCCTGTTACAAAGCTCGGGCGTCTGGTGAAGGAGGGCAGAATCCGAAGCTTGGAACAGATCTACCTCCACTCTCTCCCCATCAAGGAACACCAAATCATTGACACCCTCGTGGGTCCCACCCTCAAGGACGAGGTCATGAAAATCACGCCGGTCCAGAAACAGACCCGGGCCGGTCAACGAACCAGGTTCAAGGCCTTCGTTGTTGTCGGCGACAGTAATGGCCACGTCGGTCTCGGCGTTAAGTGCAGCAAGGAGGTGGCCACCGCCATTCGCGGCGCCATCATTCTGGCGAAGCTTTCCGTTATCCCCGTTAGGAGAGGGTACTGGGGCAACAAGATCGGAAAGCCCCACACTGTTCCTTGCAAGGTTACGGGCAAGTGCGGGTCCGTTACCGTGAGGATGGTTCCTGCGCCTCGGGGTTCGGGAATCGTGGCGGCTAGGGTTCCCAAGAAGGTGCTGCAGTTCGCTGGAATTGATGATGTCTTCACCTCCTCCAGAGGATCCACCAAGACCCTTGGCAACTTCGTTAAGGCCACTTTTGATTGCTTGATGAAAACCTATGGATTCCTGACACCAGAATTCTGGAAGGAGACTCGTTTTACCAAATCCCCATTCCAAGAGTACACAGATCTGTTGGCAAAACCAACAGGGAAGGCCCTTATCTTGGAGGAGGAGAGGGTGGATGCTTGA 816 0.576 MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRGPRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTGKALILEEERVDA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01756 271 NCBIfam 30S ribosomal protein S5 36 243 IPR005711 GO:0003735|GO:0006412|GO:0015935
Vian10g01756 271 ProSitePatterns Ribosomal protein S5 signature. 100 132 IPR018192 -
Vian10g01756 271 FunFam 40S ribosomal protein S2 40 145 - -
Vian10g01756 271 MobiDBLite consensus disorder prediction 1 39 - -
Vian10g01756 271 ProSiteProfiles S5 double stranded RNA-binding domain profile. 83 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian10g01756 271 Pfam Ribosomal protein S5, C-terminal domain 167 239 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vian10g01756 271 PANTHER RIBOSOMAL S SUBUNIT 35 229 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian10g01756 271 SUPERFAMILY dsRNA-binding domain-like 79 148 - -
Vian10g01756 271 Pfam Ribosomal protein S5, N-terminal domain 83 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vian10g01756 271 Gene3D - 146 239 IPR014721 -
Vian10g01756 271 SUPERFAMILY Ribosomal protein S5 domain 2-like 159 239 IPR020568 -
Vian10g01756 271 Gene3D - 40 145 - -
Vian10g01756 271 FunFam 40S ribosomal protein S2 146 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01756 Vian-Chr10 29285009 29286583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01756 37 259 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.031 6.90e-152 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01756 K02981 - gmx:100820352 481.1