Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01749 ATGGCTGGACCATCATGGTTGGTTGACAAAAGTAGAATTGCGACCAAAATTAAATGTGCATCAGGAACATGTGATCCTGAAAAGATTATATGGAGCAGCAATCCTACAAAGCCTTGCCCAAATTGTCAACATGATATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAAGAGATAATCTGGCACTTGCTTGCAAAAGTGGGGGTAGAAGGTTCCAAACCTCATCCTTTCATTGATGAATTTATTACTAGTCTTGAAGAAGATGATGGGATTTGCTATACTCATCCTAAAAGTTTACCTGGTATTAAGCAAGATGGAAGTGCTTCGTTCTTTTTTCATAGAGCAATCAAGGCTTACAACACTGGCAACCGAAAGCGTAGAAAGATAACAAGTCAAGATTTTGGTGAGGCCCGCTGGCACAAGACTGGAAAGACTAAACCAATTGTCTTGGGTGGGGCTCGAAAAGGATGGAAAAAGATTATGGTTCTGTATGAAAATAATATAGGAGGAGGAAAAGATGAAAAAACTAATTGGGTTATGCATGAATATCATCTAGGAGCAAAAGAAGATGAAAATGATGGGGAGTACATTTTCTCTAAAGTGTTTTACCAGCAACAAGTGAAATTGGGTGATAAAGATGATCAAGATGTTACTGAAGCAACTGAAGCAACAATTGTGAAGGTGGTTCCAAACACTCCCAAATTGGTGACACTTGATCCTCCTTGCAACAAAAGGCATTGTGCAAATCTGGACCAAGGACAAGAAACACATAGTCTACTGCTGTCTCAGATGGATTGTTTACATGAAATTCAAGATGATTGCCAAGAACTTGCAACTGAATCTCAAAATGAAGGGGTGGAAAATAAAGAAAGTAATGCTGAGGAAGGCTCGAAATGGTGGGACAGCCAGTCACAGAATATGTTGGATTCGCAACAACTGGTTGAAGCTCTGTCTCTGTGTGACGATCTCCTCTACAGCCAGTCTCCCAGTAGAGATGGAAAACATGAAGATCATAAGAGCCAACCTGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAATGTCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGTTGTCCATGATCCTGCAAATATAGTGAATGATAACCCTTCAGAGATTCGACTAAGTCAGCTGGAATTTAGTTCACAGGACAGTTTTATTTCCTGGGGATACAACAAGGCTGTGAACTAA 1251 0.4029 MAGPSWLVDKSRIATKIKCASGTCDPEKIIWSSNPTKPCPNCQHDIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVEGSKPHPFIDEFITSLEEDDGICYTHPKSLPGIKQDGSASFFFHRAIKAYNTGNRKRRKITSQDFGEARWHKTGKTKPIVLGGARKGWKKIMVLYENNIGGGKDEKTNWVMHEYHLGAKEDENDGEYIFSKVFYQQQVKLGDKDDQDVTEATEATIVKVVPNTPKLVTLDPPCNKRHCANLDQGQETHSLLLSQMDCLHEIQDDCQELATESQNEGVENKESNAEEGSKWWDSQSQNMLDSQQLVEALSLCDDLLYSQSPSRDGKHEDHKSQPGLSVYAQLGPECLKKDIEECQNLVVHDPANIVNDNPSEIRLSQLEFSSQDSFISWGYNKAVN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01749 416 FunFam NAC domain-containing protein 8 67 220 - -
Vian10g01749 416 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Vian10g01749 416 SUPERFAMILY NAC domain 44 216 IPR036093 GO:0003677|GO:0006355
Vian10g01749 416 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Vian10g01749 416 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Vian10g01749 416 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 375 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01749 Vian-Chr10 29180112 29184035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01749 23 220 NAC Transcription Factor Family AT1G28470 52.941 4.18e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian10g01749 NAM 3.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01749 - - gmx:100799488 681.789