Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01748 ATGCCTGCTGATAAGACTCAATTGGGACAATGGTTTTCAAATAATGTAAAGCCTTTAGAAAGCAGAAAGGGTACCCTAGATAAGGAATTAGTAGCTGCTGAAGAAGGAAAGACAGTTATTAAGGTAAGTCAAGATGGCAAAGGGCAATTCAAGACCATCACCGATGCCCTTAAAAGCATACCTAGCGGAAACAAGAAGCGTGTAATTTTGCATATTGGACCTGGAACTTACAAAGAGAAAATCGTGGTTGAGAGCACAAAACCTTTCATCACCTTCTATGGAACCCCTGGGCAAATGCCAACATTGACCTATGGGGGCACGGCAAAACAATATGGCACTGTTGAAAGTGGGACATTGTCTATTTTATCAGACTACTTTGTGGGGGCAAACATAATAGTTCGGAATTGTGAACTAAGAACGCTAGGCGATGATGGGTTAACTTTTATAACAGCACAAGCAAGAAAAAGTACAAAAGAGGATAATGGCTTCTCCTTTGTCCATTGTGAACTTACTGGAACTGGAACAGGTGTTTACTTGGGAAGAGCCTGGTATGGTTATTCCACGGTGATCTTTTCTTATTGTAACTTGGGCAATATTTTCAACAAGGAAGGATGGAGTGACAACAATAAAAAGGAATTTGACAAAACTCTTTATTTTGGGGAGTATATGAACACAGGACCTGGTGCAGATGCCACAGGGCGTTCTAAATTGACAAGGAAACTTCAATACTCAGAGGTTCAGAATTACCTTGGTCTTGGTATGATAGAAGGCTCAAAATGGATACTTCCTCCTCCCAAAGTTTGA 804 0.4067 MPADKTQLGQWFSNNVKPLESRKGTLDKELVAAEEGKTVIKVSQDGKGQFKTITDALKSIPSGNKKRVILHIGPGTYKEKIVVESTKPFITFYGTPGQMPTLTYGGTAKQYGTVESGTLSILSDYFVGANIIVRNCELRTLGDDGLTFITAQARKSTKEDNGFSFVHCELTGTGTGVYLGRAWYGYSTVIFSYCNLGNIFNKEGWSDNNKKEFDKTLYFGEYMNTGPGADATGRSKLTRKLQYSEVQNYLGLGMIEGSKWILPPPKV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01748 267 Pfam Pectinesterase 40 136 IPR000070 GO:0030599|GO:0042545
Vian10g01748 267 Pfam Pectinesterase 143 249 IPR000070 GO:0030599|GO:0042545
Vian10g01748 267 Gene3D - 131 264 IPR012334 -
Vian10g01748 267 Gene3D - 6 130 IPR012334 -
Vian10g01748 267 SUPERFAMILY Pectin lyase-like 38 261 IPR011050 -
Vian10g01748 267 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01748 Vian-Chr10 29173885 29175141 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01748 1 265 Carbohydrate Esterase AT5G07420 36.336 3.78e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01748 K01051 - mnt:21400122 249.595