Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01747 ATGCCGGCTGATAAGACTCAATTGGGACAATGGTTTTCAAATAATGTAAAGTCTTTAGAAAGCAGAAAGAGTACCCTAGATAAGGAATTAGTAGCTGCTGAAGAAGGGAAGACAATTATTAAGGTAAGTCAAGATGGCAAAGGGCAATTCAAGACCATCACCGATGCCCTTAAAAGCATACCTAGCGGAAATAAGAAGCGTGTAATTTTGCATATTGGACCTGGAACTTACAAAGAGAAAATCGTGGTTGAGAGCACAAAACCTTTCATCACCTTCTACGGGACCCTTGGGCAAATGCCAACATTGACCTATGGGGGCACGGCAAAACAATATGGCACTGTTGAAAGTGGGACATTGTCTATTTTATCAGACTACTTTGTGGGGGCAAACATAATAGTTCGGAACTCCGCACCAAGACCTACTCTAAACACGAATTGTGAACTAAGAACGCTAGGCGATGATGGGTTAACTTTTATAACAGCACAAGCAAGAAAAAGTACGAAAGAGGATAATGGCTTCTCCTTTGTCCATTGTGAACTTACTGGAACTGGAACAGGTGTTTACTTGGGAAGAGCCTGGTATGGTTATTCCACGGTGATCTTTTCTTACTGTAACTTAGGCAACATTTTCAACAAGGAAGGATGGAGTGACAACAATAAAAAGGAATATGACAAAACTCTTTATTTTGGGGAGTACATGAACACAGGACCTGGTGCAGATGCCACAGGGCGTTCTAAATTGACAAGGAAACTTCAATACTCAGAGGTTCAAAATTACCTTGGTCTTGGTATGATAGAAGGCTCAAAATGGATACTTCCACCTCCTAAAGTATGA 834 0.4101 MPADKTQLGQWFSNNVKSLESRKSTLDKELVAAEEGKTIIKVSQDGKGQFKTITDALKSIPSGNKKRVILHIGPGTYKEKIVVESTKPFITFYGTLGQMPTLTYGGTAKQYGTVESGTLSILSDYFVGANIIVRNSAPRPTLNTNCELRTLGDDGLTFITAQARKSTKEDNGFSFVHCELTGTGTGVYLGRAWYGYSTVIFSYCNLGNIFNKEGWSDNNKKEYDKTLYFGEYMNTGPGADATGRSKLTRKLQYSEVQNYLGLGMIEGSKWILPPPKV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01747 277 Gene3D - 143 274 IPR012334 -
Vian10g01747 277 Gene3D - 3 142 IPR012334 -
Vian10g01747 277 Coils Coil 16 36 - -
Vian10g01747 277 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 32 134 - -
Vian10g01747 277 Pfam Pectinesterase 156 259 IPR000070 GO:0030599|GO:0042545
Vian10g01747 277 Pfam Pectinesterase 40 137 IPR000070 GO:0030599|GO:0042545
Vian10g01747 277 SUPERFAMILY Pectin lyase-like 38 271 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01747 Vian-Chr10 29169716 29170969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01747 1 277 Carbohydrate Esterase AT1G69940 40.299 1.51e-86 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01747 K01051 - gmx:100813174 342.043