Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01745 ATGGAGGATTGCCGTCAAAATGAAAATGACATACATAAGATGGAATACTACAGAGGACCACATTTCATGCATCAAGTTAAAGAGCCAAATGCACTAGTTATGAATAAGAAGATTAGGTCCATTATGGCTGAAAGACAAGCTGTTATTCTAAAGCTTGAACTGGAGGCTGCAATATCTGAAAAGAATGCCTTGGCTGCTCAAGATGAAGCCATTCAAGAGAGGGATGAAGCACTTGTTCAAAGAGATAATGCCATTTTGGAACAGGATAATTCCCTTACAACCCTTCAGAGTCAGAACAGTTATGTCACCTTCCCTTTTGGCAGTGGAATTCAATGTTGA 339 0.3953 MEDCRQNENDIHKMEYYRGPHFMHQVKEPNALVMNKKIRSIMAERQAVILKLELEAAISEKNALAAQDEAIQERDEALVQRDNAILEQDNSLTTLQSQNSYVTFPFGSGIQC 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01745 112 Pfam GAGA binding protein-like family 26 97 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01745 Vian-Chr10 29151327 29151777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01745 1 112 BBR or BPC Transcription factor family AT2G21240 43.697 1.08e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vian10g01745 GAGA_bind 9.1e-08 No_clan