LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian10g01727	ATGAACGATCTAATGACCAAGTCCTTCACCAGCTACGTGGATCTAAAGAAAGTTGCGATGAAAGACGTTGATTTGGAAGCGGGTATGGCTGTTCCTCCCGATGTGGAACTCACCTCTTCCATAACCCTCTTGGACACTGACATGGGAATCTTCTTGGAAGAAGCTGAGAAGGTGAAGACTGAAATGGGGTCCCTCAGAGACATCCTCGGCAGCTTGCAGCAGGCCAACGAGGAGAGCAAGTCTCTGCATAAGGCTGAGGAGCTCAAAGCACTAAGGAGCAGGATCAACGCCAACATTGTTGCAGTCCTAAAGAAGGCCAGGGCGATTCGGACCCAGCTCGAGGAGATGGACAGGGCCAACGCCGCCAACCGGAGGCTCTCCGGTCTCAAGGACGGCACGCCGGCCATCTACCGTACCCGGATCGCTGTCACCAATGGACTGAGGAAGAAGCTGAAGGAGCTGATGATGGAGTTCCAGGGGTTGAGGCAGAGGATGATGAGTGAATACAAGGATACTGTGGGGAGAAGGTACTTCACAGTGACTGGGGAGTACCCAGATGAGGAGGTGATTGAGAAGATCATTGCAAATGGTAATGAGGAAGAGATTTTAGGGAAGGCGATTCAGGAGCATGGGAGAGGGAAGGTTCTGGAAACTGTGGTGGAGATTCAGGATAGACATGATGCTGCTAAGGAAGTGGAGAAGAGTTTGCTGGAGCTGCATCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGACATTGAGCATCATGTGTTGCACGCTTCGCACTATGTTAAGGATGGGACCAAGAATCTCCACACTGCAAAGCATTACCAGAAGAATAGCAGGAAGTGGTTGTGTATTGGGATCATATTGCTGCTCATTCTTATTCTGGTTATTGTTATTCCTGTTGCCACCAGTTTAAGCGGTTCTTGA	954	0.5021	MNDLMTKSFTSYVDLKKVAMKDVDLEAGMAVPPDVELTSSITLLDTDMGIFLEEAEKVKTEMGSLRDILGSLQQANEESKSLHKAEELKALRSRINANIVAVLKKARAIRTQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEYPDEEVIEKIIANGNEEEILGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHTAKHYQKNSRKWLCIGIILLLILILVIVIPVATSLSGS	317

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian10g01727	317	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	219	281	IPR000727	-
	Vian10g01727	317	SMART	tSNARE_6	214	281	IPR000727	-
	Vian10g01727	317	Gene3D	-	215	314	-	-
	Vian10g01727	317	Gene3D	-	48	176	-	-
	Vian10g01727	317	PANTHER	SYNTAXIN	72	302	IPR045242	-
	Vian10g01727	317	Pfam	Syntaxin	51	254	IPR006011	GO:0016020
	Vian10g01727	317	Coils	Coil	144	164	-	-
	Vian10g01727	317	CDD	SNARE_syntaxin1-like	218	278	-	-
	Vian10g01727	317	FunFam	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group	45	176	-	-
	Vian10g01727	317	FunFam	Syntaxin 132	212	312	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian10g01727	Vian-Chr10	28845638	28846680	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian10g01727	1	317	SNARE and Associated Proteins	AT1G08560	65.109	7.89e-134	380

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian10g01727	K08486		-	gmx:100816016	529.635

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