Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01707 ATGGAGAGAATAGGGGAAGTAGCTTTCTTTTGTTTAGCTTTGTTCTTCTTCCTGTCGACTTCAGTGGTTGGTTTGCTTTCTCCCAAAGGTGTCAACTATGAAGTTCAAGCTTTGATGAGCATTAAGAACTCTCTCATGGATCCTCATTCTGTCTTGAGTAACTGGGATGAAGATGCTGTAGATCCTTGCAACTGGGCTATGGTCACATGTTCCTCTGATCATTTTGTCACTGCCCTGCTTCTGCAGGATAACAATATTACAGGACCAATCCCCTCTGAGATTAGTAGACTCCAAAAGCTTCAAACTCTTGATCTTTCGGACAATTTCTTCACCGGTCAACTTCCAGATTCCCTTTCCCAAATGAAGGGTCTCCATTACTTGCGGCTAAACAATAACAGTTTGACTGGACCAATTCCTTCTTCTTTGGCTAACATGACTCAACTTGCCTTTCTCATCGTAGGCAATCCTCAGATATGTGCCGCTGGAGTCGAGCAGAACTGCTTCAGGACAACGTCAATTCCTTTGGCTCCCAATAATTCTCAAGATTCCCAATCCACCAAAAGACCAAAGAGTCACAAAGTAGCCTTGGCGTTTGCCTCAAGCTTAAGCTGCATATGCTTACTAATTCTGGGACTTGGCTTCCTCATATGGTGGAGACAAAGGCATAACAAGCAAATATTCTTTGATGTTAATGAACAACACCGTGAAGAGGTTTTTCTTGGAAACCTCAAGAAGTTCCATTTCAGAGAACTTCAGCTTGCTACAAACAACTTCAGCAGCAAGAACATGATTGGCAAAGGTGGTTTTGGACATGTCTACAAAGGGTATCTTCAGGATGGTACAGTTATAGCAGTAAAAAGGCTCAAAGATGGTAACGCTATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTCCATCGGAATCTTCTTCGGCTATATGGATTCTGCATGACAACTACAGAGAGGCTCTTGGTTTATCCTTACATGTCAAATGGAAGTGTCGCTTCTCGTCTGAAAGGTATGGCAATTTTATCCTGCCAGATTGGTGTGAAGAAAATTCATCAAGAGAAGAAAATTGACTTGTTGGTTGACAAGGACCTGAAAAACAACTATGATAGGATTGAGCTTGATGAAATTGTGCAAGTGGCTCTTTTATGTACTCAGTACCTTCCAAGTCACAGACCCAAGATGTCTGAGGTGGTTAGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCCTCGCAGAGAGCAGAATCCACAAGAAGCAGAGGAAATGAACTTTCTTCTTCAGAGCGCTACTCTGATCTCACTGATGATTCTTCATTACTTGCACAAGCAATGGAACTTTCTGGGCCAAGATGA 1386 0.4286 MERIGEVAFFCLALFFFLSTSVVGLLSPKGVNYEVQALMSIKNSLMDPHSVLSNWDEDAVDPCNWAMVTCSSDHFVTALLLQDNNITGPIPSEISRLQKLQTLDLSDNFFTGQLPDSLSQMKGLHYLRLNNNSLTGPIPSSLANMTQLAFLIVGNPQICAAGVEQNCFRTTSIPLAPNNSQDSQSTKRPKSHKVALAFASSLSCICLLILGLGFLIWWRQRHNKQIFFDVNEQHREEVFLGNLKKFHFRELQLATNNFSSKNMIGKGGFGHVYKGYLQDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKGMAILSCQIGVKKIHQEKKIDLLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01707 461 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vian10g01707 461 Gene3D Transferase(Phosphotransferase) domain 1 331 428 - -
Vian10g01707 461 Gene3D Ribonuclease Inhibitor 30 187 IPR032675 -
Vian10g01707 461 SUPERFAMILY Protein kinase-like (PK-like) 231 348 IPR011009 -
Vian10g01707 461 ProSiteProfiles Protein kinase domain profile. 258 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01707 461 Gene3D Phosphorylase Kinase; domain 1 227 330 - -
Vian10g01707 461 MobiDBLite consensus disorder prediction 428 452 - -
Vian10g01707 461 MobiDBLite consensus disorder prediction 418 461 - -
Vian10g01707 461 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 362 421 - -
Vian10g01707 461 Pfam Protein kinase domain 259 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01707 461 SUPERFAMILY L domain-like 33 162 - -
Vian10g01707 461 FunFam Somatic embryogenesis receptor kinase 1 227 334 - -
Vian10g01707 461 ProSitePatterns Protein kinases ATP-binding region signature. 264 286 IPR017441 GO:0005524
Vian10g01707 461 FunFam Leucine-rich repeat receptor-like kinase 33 161 - -
Vian10g01707 461 Pfam Leucine rich repeat 77 134 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01707 Vian-Chr10 28472853 28476261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01707 356 461 Receptor kinase-like Gene Family AT5G16000 79.464 1.92e-47 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian10g01707 Pkinase 8.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01707 - - gmx:100790194 583.948