Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01697 ATGATTGGAGAAGACCAGAGCATATGCCACTATGCGCACACCCCTGGCACAGAGGAAGATGCTGATTGTGCTGTTTGTCTGAGCAAAATTGGAGACGGTGAAGAGATTAGAGTTCTTAGGTGTGAACATTTCTTTCACAGAAATTGCTTGGATGCATGGGCTGCTCTCAAAAACCCATCTTGCCCTCTTTGCAGAGAACCGATTAGGCCAAGAAGAACCCTCAATGAGGTTGGAGCTGAAGTTCTGTGGTTTCAATTTTGCTCTGTAAACACAACTGAGGGCGACAGATGGTGGCTTCGTTGA 303 0.4653 MIGEDQSICHYAHTPGTEEDADCAVCLSKIGDGEEIRVLRCEHFFHRNCLDAWAALKNPSCPLCREPIRPRRTLNEVGAEVLWFQFCSVNTTEGDRWWLR 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01697 100 SMART ring_2 23 64 IPR001841 -
Vian10g01697 100 SUPERFAMILY RING/U-box 17 74 - -
Vian10g01697 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 73 IPR013083 -
Vian10g01697 100 Pfam Ring finger domain 22 65 IPR001841 -
Vian10g01697 100 ProSiteProfiles Zinc finger RING-type profile. 23 65 IPR001841 -
Vian10g01697 100 PANTHER - 3 74 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01697 21 68 C3H Transcription Factor Family AT1G15100 52.083 6.30e-14 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01697 K16282 - vvi:104878969 112.849