Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01696 ATGGAGAAAGATCACAACTATTCGGCACCAGTATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGATCACGACCAACACCACCTTTATCCACCAAATCACCATCAACAGCAGCTCATGAAGTTCCAAGCTTCTGGTGATGAAAACAACAGTGGGTCAATGGTGGATTACATGCCTCAAACACCACCACCACCACCACATGGCTTTTACGGTGGTCCTAGCACTGGCACAATATCCTATGATAAATTGAGTTTTGCAGACGTGATGCAGTTTGCGGATTTTGGACCTAAGTTGGCTTTGAATCAAACAAAAAGCTGCGAAGAATCTGGGTTAGATCCAGTTTACTTTCTCAAGTTTCCGGTGTTAAACGACAAGATGGAGGAAGAGCAGACTCTGATGGTGAATGAGGAGCCTGATGGTGAAGCAGAAAATCACGATGAGAGGTTCAAGTTGGTGGATGTGGAGGAGAAGTCAAGGGTTGGTGAAGAGGGAATGATGATGAGAGAAGATGAAGAGACTCGGCTTTCTGATGACAACAATTCCGTGCAGATTCGGTTTCTTGGTCAGGAAGAGACTCAGAAGAATGCAGGAGTGCAGGAAAACAAGAACAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAGGAAGTTGAGAGCCAGCGCATGACCCACATAGCAGTTGAAAGGAATCGTAGGAAGCAAATGAATGAGCATCTTCGTGTTCTTAGATCACTCATGCCTGGTTCATATGTTCAAAGGGGTGATCAAGCTTCTATAATTGGAGGAGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGGAGGAGGCTACTGGGAGAAGCTCAAGCAAGACAAGTTGGGGAACCCTCCATTGCACAACAACAACAACCTCCATTCTTTCCACCTTTGGCAATTCCGAACGAGCAGATGAAGCTGGTGGAGTTGGAGAGTGGACTTCGTGAAGAAACAGCAGAGAGCAAGTCATGTTTGGCTGATGTTGAAGTCAAGCTTCTAGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTCGAAGATCTGCAACTGATAATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGTTCGGTGCAGCAGATATTCAATTTTATCCATGCAAACACTAGCATGTGA 1284 0.4478 MEKDHNYSAPVSMPPSFNTLDYSLDHDQHHLYPPNHHQQQLMKFQASGDENNSGSMVDYMPQTPPPPPHGFYGGPSTGTISYDKLSFADVMQFADFGPKLALNQTKSCEESGLDPVYFLKFPVLNDKMEEEQTLMVNEEPDGEAENHDERFKLVDVEEKSRVGEEGMMMREDEETRLSDDNNSVQIRFLGQEETQKNAGVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGEPSIAQQQQPPFFPPLAIPNEQMKLVELESGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01696 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 288 IPR036638 GO:0046983
Vian10g01696 427 MobiDBLite consensus disorder prediction 199 223 - -
Vian10g01696 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 272 IPR011598 GO:0046983
Vian10g01696 427 SMART finulus 227 278 IPR011598 GO:0046983
Vian10g01696 427 FunFam Basic helix-loop-helix transcription factor 212 287 - -
Vian10g01696 427 PANTHER TRANSCRIPTION FACTOR FAMA 140 418 IPR044283 GO:0003700|GO:0010052
Vian10g01696 427 MobiDBLite consensus disorder prediction 191 223 - -
Vian10g01696 427 CDD bHLH_AtFAMA_like 224 291 - -
Vian10g01696 427 Gene3D - 212 287 IPR036638 GO:0046983
Vian10g01696 427 Pfam Helix-loop-helix DNA-binding domain 222 273 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01696 Vian-Chr10 28334015 28335636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01696 46 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.330 8.34e-152 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g01696 HLH 9.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01696 K26213 - gmx:100813515 677.937