Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01694 ATGGCTTCCAAGCCCCGCACAGTTGAAGAAATCTTCAAGGATTTTAGAGCCCGAAGAAACGCTATTATTCGCGCACTCACTCACGACGTTGATGAATTTTACGGACTCTGTGATCCAGTTAGCGTAAGAAAGTCAAATAATAGTACTGAGTTTGCTGTGTGGCATTTGGGTCTGGTAGCAGAGGGGAAGGATAACTTGTGCCTCTATGGACATCCAAACGGGGCCTGGGAGGTAGCTCTGCCATCGGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCCAGGGACGACCTGAGCCGCAAGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGCTGCTTGCAGTGGCCTTTTACCTTGGAACTCGGCTTAACCACAATGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACTGTTTTTCAAGTTGCTACTGGCAATAAACCAATTAAGGAGAAGCTGACAATGGATAGCGGAAGCAAATCTGATGTAAGCATCGATGTTAGTGATTTCCTTTCTTTTTTTCTAGTGATTATTGTTTCTTTTGGCTGGTTAGGTATTGGTTCTGTAATGGGAGCCATGATGAAAGGTGAGCCTATTAAAATATTTTGTGGAAGCTGTGGTGGAAAATACAATGGAGATGAACTTTGGATCGGGTGTGATATATGTGAGTGGTGGTACCATGGGAGGTGCGTTATGATTAACCCTGCAAAGGCTGACACCCTAAAGCGCTATAAATGTCCATCATGCAGCTTGAGGAGGAGCAGGTCAATGACTGAAGGCAATGAAATGGGAATAAGTGACCCAGGTGAATCTTGTTTCATGGCTGACAAGATCACAAGATAG 873 0.4513 MASKPRTVEEIFKDFRARRNAIIRALTHDVDEFYGLCDPVSVRKSNNSTEFAVWHLGLVAEGKDNLCLYGHPNGAWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVATGNKPIKEKLTMDSGSKSDVSIDVSDFLSFFLVIIVSFGWLGIGSVMGAMMKGEPIKIFCGSCGGKYNGDELWIGCDICEWWYHGRCVMINPAKADTLKRYKCPSCSLRRSRSMTEGNEMGISDPGESCFMADKITR 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01694 290 Pfam PHD-finger 212 260 IPR019787 -
Vian10g01694 290 FunFam PHD finger alfin-like protein 206 261 - -
Vian10g01694 290 ProSiteProfiles Zinc finger PHD-type profile. 210 262 IPR019787 -
Vian10g01694 290 CDD PHD_AL_plant 212 262 IPR044104 -
Vian10g01694 290 PANTHER CPG BINDING PROTEIN 4 265 IPR045104 GO:0006355|GO:0042393
Vian10g01694 290 Pfam Alfin 7 154 IPR021998 GO:0006355|GO:0042393
Vian10g01694 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 260 IPR013083 -
Vian10g01694 290 ProSitePatterns Zinc finger PHD-type signature. 213 259 IPR019786 -
Vian10g01694 290 SMART PHD_3 212 260 IPR001965 -
Vian10g01694 290 SUPERFAMILY FYVE/PHD zinc finger 211 265 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01694 Vian-Chr10 28319740 28323288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01694 2 266 Alfin-like Transcription Factor Family AT5G05610 54.511 8.73e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian10g01694 Alfin 1.1e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01694 K26274 - vra:106776977 468.003