Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01684 ATGATGAAGAATGTTGAAAACAAAGATGCATCCAATTCTGAGACTTTTGCAAAGTCCAAACTCGTTATGGAACATGATGTCAGAGATGAATTTGGTTTACCTTCTTTTTCAAAGAAGAGAAAGAAGAGGGAAGATACTAATGATCAATTGCCCAGCAAAGGTAAAAAGAAGGTGTTTCGACCTAAATTGGTGTCTCAAATACCTAAAAGAAGAAAAAAATCTCAAGTCAAAAGTAAGACTCCAAAACCTTCAACCCCGGAACAAAGAGAAAATAACATAAGAAGGGGTGGTTCTTGCGAGAGGCAGTTGTTCAATGAAGATTCTTCAAATGCTAGCAACGAAATAGGCATTCAACACAATTCAGTGCAAAGTTATCACAAAATGTCATCTTTATCAGGTTTATGTCTACTAAAAGAGAAACAAATTGGATCAGAATTTCCATTCTTGTTCAAGAAAAAGAGAGTCCTTAAAAGAAGATTGCATTTGCTAAAATTCTTGACCCCTATTGAAAAAAGGAGATCAAAGTGGTTCAGTAGAAAGAGAAGACAAAAGGTAGATTTCAGTGTAGATGATAGCAATTTCAAGAATAAGATGCTGATAAATAGAATCAAGAAATTTTCTTCTTTGATGAAAAAAGGTAAAAGTAAAAAGATCAATGAGCTTGATAACTGCAAAGACTCTCGAAAATTGGTTCTTTACAAAAAGTCAGCTTTAAATGATAGTTTACTTGATGAGGAAACATCAAGAGTGTGGAAGTTGCTGGAGCAGGAAAAAGGGCATGATGAGAATGATGAGATGAAGAGAAAATATTGGGAAAACATCAGAAAAATATATCAATGCAAGGTTGAATCATTCATAGATCACATGCATTTCATTCAAGGAGACAGACGTTTTCTACCATGGAAAGGTTCAGTTTTGGATTCTGTGATAGGAGTCTTCTTAACACAAAATGTGGCTGACTATTTATCAAGCTCCGCGTTCATGTCACTTGCTTCAAAGTTTTCTTTAGAGAAAAAAGAAAGGAATCTGGAAAAAGAAGAAAAAGAAGATGAAAAAGAAAAGAAAGAAGATGAAGATAAAAATGAGTCAAGTTCTATCAAAATTGATGATAAAGGAACAACTAATGTAAGAAGTGAAGAGACAAACGTTGTTGATGAGAAAAAGTCAAAGGAAAAGAAAACAAAAGAAGAAGAAGAAGAGATGAGAAAAAAGAGAGAATATTGGGATTCATTAAGAAAAATATATACTAAAAATTATCGAAGTGAAGATTATATGGATTCTGTGGATTGGGAAGCAGTGAGAGTTGCAAAAAAAAGAGAAGTTGCACAAACTATAGCAGCTCGAGGTCAGCATAATATCATAGGAGAAAGAATACAGGATTTACTTAAGAGTTTGATGGAATCCAACGGAAGCCTAGACTTGGAATGGTTAAGATATGCTCCACCAAAAGACGTAAAAGAATATCTGTTGGCCATAGGAGGATTGGGATTAAAGAGTGTTGAGTGCGTTAGACTTTTAGCCCTCCATCACACTGCTTTTCCGGTGGACATAAATGTTACAAGAATTGTTGTCCGTTTAGGATGGGTTCCCATCCAACCATTGCCAGAATATATTCAAATACATAATTTAGAGATGTTTCCTGATTCAGATAAAATTCAACAATACCTTTGGCCACGGTTATGCACACTTGATCCGCCTCAATTGTATGAATTGCATTATCAACTCATAACTTTTGGAAAGGTCTTCTGCACAAAACAAAAGCCAAATTGTAATGCTTGTCCATTGAAAAGTGATTGTAAATATTTTGCAAGTGCTTTTTCGAGAGAAAAATTAGCCTTGCCGGAATCAAAGCTAGATTACGAAGATAAAACAGTATCAAAATTTGCTTTACCTGAACCAACATGTCTGATTTATGAGCCAAAAAGATGTGAACCTACCATTGAGCATCCACCATCACCAGAACATGTAGATGATTGTAAAGACATTGAAGACATTTCAAAAGATTATTATAATTCAGAATCTAAGGAAGATATCAGTCTATCCAAAGCTATAATTACATCTTATGCAGATCATATTCCTATGCAAAAAATGAAGGATGTTAGTCGTCTAAAAACAGAGCGTTTAGTTTATGTTCTTCCAGATAATCATCCTTTGTTGTCGGCGATGCAGTGTGAACAAAGGCAAGCAGATGATCCTTGCCCTTATCTCCTAATATTATGGGATAGAGGTGAATTAGAAGATTCATGTGAATCAAATTTGGACGAGGAAGCAAATACACTTACTATTCCTGCAACTCTTTTGATACCATGTCGAAGTGCTATGAGGAGTCGTTTTCCACTTAATGGGACGTATTTTCAAGTTAACGAAGTGTTTGTTGATTATGCTTCAATGATACATCCTATCAATGTACCAAGAAAGTGGTTATGGAACTTAGATCAACGAATAGTTTATATTGGGACGACTGTTTCATCAATCATGCGAGGTTTTGTTTGTGTGAGAGCATTTGATGTGAAGACCAGAGCACCTAGACCTATATCTGAGATGTTACATCGCAACACAACCGCTAAACTTAGAAAAGATCTTAAGGTTGAGGGACCTGTTGAGCCAAGACCTCAAGGTGCCACTTCCCCTCCGTGGAAGTCCGGCAGTCGGCCCTCTTCCGTTATCAACTGCTGTCTCCTTCGCATTCTCCGCCTTCTTGCAAAGCGTGAAATTCCTCGCTCCATGCCCAAGATGAGGGCAATAGAGAGAGAATCCAGCGTTGTCGGTCCCAAGCAGAGGAAGGCGCCCCTCCCGGGCGTAACTCTTGAGCGCGGTCTCAATGACCGCAGCGACGAGCTCCTCCTCGTTGACGACGAAGCGAAGGGGCCCTGCACTCCCCAGCACGTTGATGCTGATGAGGAACCTCCTCACGTTCGGGTTCTGGTTCTTCTTCTGCTTGGACAACAACATCGTGCCCCAAACACAACAAACAAACAAAGAAAGAAAGTAGACGAAAAAGAAGGATCCGAAATTTCGAGATCTGAAAAAGGAAGCTGGAAGGAATGGGAGGGAGCGCTCGCCCTTGATGGGGAAAGGGAGCGCATGAAACCGAAGGAGGACGAGGGCGTGGAAGAGGATGATGAAGAAAGGGGTATTTATACAAAGGGAAAACAAGGGAGCAGAAGAAGCGTTTGGATTGAACTCAAATTCGCATTTGGGTTTGGTGAGGTCAGGCTTGGGCTGGATCTATTTCAAACCGAAACTGTTGCAATCACATTAGGAGTTGCGTGTTATTGTCGTGTTTCAATGGACAATAGTATTCTGGGACTTCTCAAACTTCGAATTATAAGAGGTTATGATCTTGCAATTCGCGATGCCATTAAAGGACGTGCCAGTGACCCTTATGTCGTCGTCAGCATGGGCGATCAGAAGCTGAAGACTTCCGTTAAAAAAAACAACTGCAATCCTGAGTGGAATCAAGAAAGGACTCTTTCTATAAAGGACGTTACAACCCCGATACGTTTGTCAGTTTATGACAAAGACACATTCTCAGGGGATGACAAAATGGGAGATGCAGACATAGACTTAATACCATATGTTCAGTCTGTGAGAATGGGATGGACTGACCTTCCAAATGGTACTGTAGTGAGGATCATTCAACCAGATGAAACTAATTGCCTTGCCAAAGAAAGCAACTGCGTTTGGCAAAATGAAAACATCATCCAAGAAATGGTTTTGAAATTGAGAAATGTTGAGAGTGGGGAAATAGTTGTCCAAATAGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACATCTCGATCTTTAA 3813 0.39 MMKNVENKDASNSETFAKSKLVMEHDVRDEFGLPSFSKKRKKREDTNDQLPSKGKKKVFRPKLVSQIPKRRKKSQVKSKTPKPSTPEQRENNIRRGGSCERQLFNEDSSNASNEIGIQHNSVQSYHKMSSLSGLCLLKEKQIGSEFPFLFKKKRVLKRRLHLLKFLTPIEKRRSKWFSRKRRQKVDFSVDDSNFKNKMLINRIKKFSSLMKKGKSKKINELDNCKDSRKLVLYKKSALNDSLLDEETSRVWKLLEQEKGHDENDEMKRKYWENIRKIYQCKVESFIDHMHFIQGDRRFLPWKGSVLDSVIGVFLTQNVADYLSSSAFMSLASKFSLEKKERNLEKEEKEDEKEKKEDEDKNESSSIKIDDKGTTNVRSEETNVVDEKKSKEKKTKEEEEEMRKKREYWDSLRKIYTKNYRSEDYMDSVDWEAVRVAKKREVAQTIAARGQHNIIGERIQDLLKSLMESNGSLDLEWLRYAPPKDVKEYLLAIGGLGLKSVECVRLLALHHTAFPVDINVTRIVVRLGWVPIQPLPEYIQIHNLEMFPDSDKIQQYLWPRLCTLDPPQLYELHYQLITFGKVFCTKQKPNCNACPLKSDCKYFASAFSREKLALPESKLDYEDKTVSKFALPEPTCLIYEPKRCEPTIEHPPSPEHVDDCKDIEDISKDYYNSESKEDISLSKAIITSYADHIPMQKMKDVSRLKTERLVYVLPDNHPLLSAMQCEQRQADDPCPYLLILWDRGELEDSCESNLDEEANTLTIPATLLIPCRSAMRSRFPLNGTYFQVNEVFVDYASMIHPINVPRKWLWNLDQRIVYIGTTVSSIMRGFVCVRAFDVKTRAPRPISEMLHRNTTAKLRKDLKVEGPVEPRPQGATSPPWKSGSRPSSVINCCLLRILRLLAKREIPRSMPKMRAIERESSVVGPKQRKAPLPGVTLERGLNDRSDELLLVDDEAKGPCTPQHVDADEEPPHVRVLVLLLLGQQHRAPNTTNKQRKKVDEKEGSEISRSEKGSWKEWEGALALDGERERMKPKEDEGVEEDDEERGIYTKGKQGSRRSVWIELKFAFGFGEVRLGLDLFQTETVAITLGVACYCRVSMDNSILGLLKLRIIRGYDLAIRDAIKGRASDPYVVVSMGDQKLKTSVKKNNCNPEWNQERTLSIKDVTTPIRLSVYDKDTFSGDDKMGDADIDLIPYVQSVRMGWTDLPNGTVVRIIQPDETNCLAKESNCVWQNENIIQEMVLKLRNVESGEIVVQIEWVDVIGCKGLSHLDL 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01684 1270 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1103 1206 IPR035892 -
Vian10g01684 1270 SMART ccc3 582 602 IPR003651 GO:0051539
Vian10g01684 1270 MobiDBLite consensus disorder prediction 986 1049 - -
Vian10g01684 1270 Gene3D - 498 613 IPR023170 -
Vian10g01684 1270 MobiDBLite consensus disorder prediction 991 1035 - -
Vian10g01684 1270 MobiDBLite consensus disorder prediction 862 883 - -
Vian10g01684 1270 ProSiteProfiles C2 domain profile. 1085 1206 IPR000008 -
Vian10g01684 1270 Pfam C2 domain 1104 1192 IPR000008 -
Vian10g01684 1270 MobiDBLite consensus disorder prediction 19 55 - -
Vian10g01684 1270 Coils Coil 333 361 - -
Vian10g01684 1270 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 381 853 IPR044811 GO:0019104|GO:0035514|GO:0080111
Vian10g01684 1270 MobiDBLite consensus disorder prediction 56 78 - -
Vian10g01684 1270 MobiDBLite consensus disorder prediction 341 399 - -
Vian10g01684 1270 MobiDBLite consensus disorder prediction 916 937 - -
Vian10g01684 1270 MobiDBLite consensus disorder prediction 1 18 - -
Vian10g01684 1270 Pfam RRM in Demeter 765 851 IPR028925 -
Vian10g01684 1270 Coils Coil 384 404 - -
Vian10g01684 1270 SUPERFAMILY DNA-glycosylase 281 604 IPR011257 GO:0003824|GO:0006281
Vian10g01684 1270 MobiDBLite consensus disorder prediction 1 99 - -
Vian10g01684 1270 Gene3D C2 domain 1102 1261 IPR035892 -
Vian10g01684 1270 SMART C2_3c 1104 1202 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01684 Vian-Chr10 28145035 28165544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01684 1138 1267 C2H2 Transcription Factor Family AT1G70790 56.818 7.83e-46 160