Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01683 ATGGACAATAGTGTGTTAGGTATTCTCAAACTTCGAATCATAAAAGGCATTAATCTTGCAATTCGTGATTCTCATGCCAGTGATCCTTATGTCGTCGTCACAATGGCTGATCAGAAGCTGAAGACGCGTGTTATAAAAAGCAACTGCAATCCTACGTGGGATGAAGAAATGACCCTTTACGTAAAGGATGTTAATACCCCATTACATCTGACAGTTTATGACAAAGACACTTTCACTGTGGATGACAAAATGGGTGAGGCAGAAATAGACTTCATACCTTTTCTTAAGTGTAAGAAGATGGAATTGAAAAACCTCCCAAATGGTTGCGCAGTGAAGAGGATCCAACCAAATAGAAGTAATTACCTTGCTGAAGAGAGCAGTTGTGTTTGGAATGATGGTGATATTGTCCAAAAAATGATTTTGAGATTGAAAAATGTTGAGAGGGGTGAAGTGGTTGTGCAAATTCAGTGGGTTGATGTTGTTGGTTTCAAGGGCTTATCACATATAAAACTTTGA 516 0.3857 MDNSVLGILKLRIIKGINLAIRDSHASDPYVVVTMADQKLKTRVIKSNCNPTWDEEMTLYVKDVNTPLHLTVYDKDTFTVDDKMGEAEIDFIPFLKCKKMELKNLPNGCAVKRIQPNRSNYLAEESSCVWNDGDIVQKMILRLKNVERGEVVVQIQWVDVVGFKGLSHIKL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01683 171 Pfam C2 domain 7 92 IPR000008 -
Vian10g01683 171 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vian10g01683 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 162 IPR044562 -
Vian10g01683 171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 101 IPR035892 -
Vian10g01683 171 CDD C2_ArfGAP 6 149 - -
Vian10g01683 171 SMART C2_3c 8 103 IPR000008 -
Vian10g01683 171 Gene3D C2 domain 3 163 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01683 Vian-Chr10 28137019 28139675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01683 39 168 C2H2 Transcription Factor Family AT1G70790 62.879 2.09e-57 175