Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01676 ATGAGGAAGGCTGCTTCTCGTGATAATTTGGCCGACAACTATTTATACTGTCCTAAGGCTGTAGATCTACAGGACAAGGATTTAAATCATTTTCAGTGGCACTGGGAAAAGGGGGAACCTGTCATTGTCAGCAATGTGCTTGAGTGCACTTCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTACGTAATGTAGCTAGTGCTACCCAACGTGGTCAACATTTGGATGTGGAAACAATTGATTGCTTAGACTGGTGTGAGGGGAGAATTAATATCCACCAATTCTTTACTGGGTATACAGAAGGTCGAATGGATTGGCTTGGTTGGCCTCAAATTTTGAAATTAAAGGATTGGCCACCTTCTAATTTATTTGAGGAACAATTGCCTCGTCATTGTGCTGAGTTCATATCATCCTTACCCTTCAAGGAATATACTGATCCTCTCAGAGGTGCTCTTAACCTTGCTGTGAAGTTGCCTGACGGTTGTCTAAAGCCAGACATGGGGCCAAAGTCTTATATTGCTTATGGATTTCCTTCAGAGCTCGGGCGTGGTGATTCTGTTACTAAGATCCATTGTGACATGTCAGATGCAGTAAATGTTTTGACCCACATTGCTGAAGTGAAATTGAATTCTAAGCAACTTACTGCCATTGAGGAGTTGAAACAAAAGCATTTTGAGCAAGACAAAAGAGAGTTATGTGGTAATGATCATGATGTAGAAACTAATACTGACATGCTTAATAATTCCTCTTCTGCCATAATTGCTTTGGACAACCAGAATACTGTTCAACTCATGGAACATGAAGGTGGATTATGTGATCAGAAAGCAGTCAATCAGTTTCATCAATCTGGTAATAATGAGATTGCCACTGCTAGGGAGGATGGTCTTTTATGTGAGTCAGAAGTCAAAGAGGTTGACAAAGTGGACACAAAACTAGAAAATGATTTGTTGTTTGGGGGGGATGCTTCTGAAGGTGCTCTCTGGGATATTTTTCGGAGGCAGGATGTATATAAATTGCAAGAATATCTGAAGAAGCATTTCCGAGAGTTCAGGCATGTCCATTGCTGCCCCTTAAAGCAGGTTATTCACCCCATTCATGACCAGACTTTTTATCTGACTATGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGTTAGGAGATGCTGTTTTTATTCCTGCTGGTTGTCCTCACCAAGTCAGAAATCTCAAGTCATGTATAAAAGTTGCGGCGGATTTTGTGTCCCCTGAAAATGTTGGAGAGTGCTTTCGGTTGACAGAAGAATTTCGCACACTTCCAATAAATCACAAGTCCACAGAGGACAAATTGGAGGTAAAGAAAATGACAGTATTTGCAATTCAAGATGTCGTTGAAAAGTTGGAGAAATCAAGGTTAGAGATTGCAGACATCTGA 1446 0.4115 MRKAASRDNLADNYLYCPKAVDLQDKDLNHFQWHWEKGEPVIVSNVLECTSGLSWEPLVMWRALRNVASATQRGQHLDVETIDCLDWCEGRINIHQFFTGYTEGRMDWLGWPQILKLKDWPPSNLFEEQLPRHCAEFISSLPFKEYTDPLRGALNLAVKLPDGCLKPDMGPKSYIAYGFPSELGRGDSVTKIHCDMSDAVNVLTHIAEVKLNSKQLTAIEELKQKHFEQDKRELCGNDHDVETNTDMLNNSSSAIIALDNQNTVQLMEHEGGLCDQKAVNQFHQSGNNEIATAREDGLLCESEVKEVDKVDTKLENDLLFGGDASEGALWDIFRRQDVYKLQEYLKKHFREFRHVHCCPLKQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVAADFVSPENVGECFRLTEEFRTLPINHKSTEDKLEVKKMTVFAIQDVVEKLEKSRLEIADI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01676 481 Pfam JmjC domain, hydroxylase 328 424 IPR003347 -
Vian10g01676 481 ProSiteProfiles JmjC domain profile. 149 441 IPR003347 -
Vian10g01676 481 Gene3D Cupin 10 450 - -
Vian10g01676 481 SUPERFAMILY Clavaminate synthase-like 27 459 - -
Vian10g01676 481 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 475 IPR045109 GO:0032454|GO:0033169
Vian10g01676 481 SMART cupin_9 130 441 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01676 Vian-Chr10 28068182 28081674 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian10g01676 JmjC 1.1e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01676 K15601 - gmx:100805723 807.749