Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01669 ATGGATAAAAAGTATTTCGAGATCTATAACAATATTACCTTCTTTGGATGCCTTCGCAACACCCAAAACAAAATTTCAACCCCTCCAAACATGGTTTTATACAGACACTGTCAAAACATGTCTTTAAACTACGACATGTACTTCAGTTCTTCCCATCAAGTCGACTATCCCATGCCCAACATTCCGTTCGCATGCTTACTTTTTCAGGTTTCTCAATCTGGATCCTTTTGCAATTACCCTTCATTTACACTTTTATTTTCTATTCTCCAAATTAAATTAAAAATGCCCAAAAATTGCAAAGCCTGTCCTCATGGCCTGTGTAAGTTGAAGTTTGAAGGACAACGCCTCAATTGTGACCCACCCAGTGATTATGGACAACCACCTCGTCTTTCCCCGCCCCTGGTTTCTCCATCTCCAACGGCCAAGGCTAAGAAACTGGCTTTATGTGTTGGAATACCAGTCCTGGTTGGGGTTTTTGCCTTGGTTGGTGTTATTCTTTTGTTGTTGAAAGGAAGAAAGAAACGTTCAGGCCTCCAAAACAAATTAAGAAACGCTTATTCTTCTTCCTTCAGAGATACAACGTCCATGGAAAGTGGAGGTGTCTACTTTGGGATCTCTGTCTTCTCCTTCGACGAGCTCAGAGAGGCAACCAACAATTTTGATGAAGCTAGGAAGCTTGGAGAAGGAGGCTTTGGAACTGTTTACTTGGGAAAACTTAGAGATGGTCGTGAAGTTGCAGTGAAGCGCCTGTTCGAGCGCAGCTATAGGCCAGTGGAGTCATTCATCAATGAAATCCAGATTCTCACACGTCTGCGACACAGAAACCTTGTGTCCCTCTACGGCTGCACTTCGCGTCACAGCCGGGACTTACTGCTAGTGTACGAGCACATCCCAAATGGTACTGTTAGCTCTCATCTCCATGGTGATGAAGGAAATTCATGCTTTCTGCCATGGCATCTGAGAATGAAAATTGCCATACAAACTGCTAGTGCATTGGCTTATCTCCACGCTTCTGACACCATTCACAGGGACGTGAAAACCAGCAATATTCTCTTGGACAATGCGTTTGATGCTAAGGTTACGGATTTTGGTCTTTCAAGGCTGTTCCCTGATGATGTCACTCACGTTTCCACTGCTCCAAGAGGTACCCCTGGTTATGTTGATCCGGATTATCGGCTATGTTACCAGCTGACAACAAAGAGTGATGTATATAGCTTTGGGGTTGTGCTTGTTGAGTTAATATCATCTCTCAAAGCAGTTGATATGAACAGGAACAGGGAAGACATTAAGTTGGCAAATCTTGCCATTAGGAAGATTCAAAAGGGTGCCTTTTCTGAGTTGGTTGATCCTTCCCTTGGTTTCCAATCAGATGAGAAACTAAAAATGATGATAGGTTCGGTGGCAGAGTTGGCTTTTCAGTGTCTGCAACAGGACAAGGAATTGAGACCCTCTATGGCAGAAGTATTGGAGGTGCTGGAGAGAATTCACAGTGGCAGGGATGAGCCACCGAATCAGGAGGGAATTGTCGTTAATGGTGCTATAAGAGCTTCTCAAAGCTATGCTCACCCACCTCTTCCAAACACTCTGATAAACCCACAAAAGCGCCTTTTCAAAACAAACTGA 1623 0.4381 MDKKYFEIYNNITFFGCLRNTQNKISTPPNMVLYRHCQNMSLNYDMYFSSSHQVDYPMPNIPFACLLFQVSQSGSFCNYPSFTLLFSILQIKLKMPKNCKACPHGLCKLKFEGQRLNCDPPSDYGQPPRLSPPLVSPSPTAKAKKLALCVGIPVLVGVFALVGVILLLLKGRKKRSGLQNKLRNAYSSSFRDTTSMESGGVYFGISVFSFDELREATNNFDEARKLGEGGFGTVYLGKLRDGREVAVKRLFERSYRPVESFINEIQILTRLRHRNLVSLYGCTSRHSRDLLLVYEHIPNGTVSSHLHGDEGNSCFLPWHLRMKIAIQTASALAYLHASDTIHRDVKTSNILLDNAFDAKVTDFGLSRLFPDDVTHVSTAPRGTPGYVDPDYRLCYQLTTKSDVYSFGVVLVELISSLKAVDMNRNREDIKLANLAIRKIQKGAFSELVDPSLGFQSDEKLKMMIGSVAELAFQCLQQDKELRPSMAEVLEVLERIHSGRDEPPNQEGIVVNGAIRASQSYAHPPLPNTLINPQKRLFKTN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01669 540 Gene3D Phosphorylase Kinase; domain 1 193 296 - -
Vian10g01669 540 Pfam Protein kinase domain 221 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01669 540 FunFam Wall-associated receptor kinase-like 20 297 505 - -
Vian10g01669 540 FunFam receptor-like protein kinase FERONIA 182 296 - -
Vian10g01669 540 ProSiteProfiles Protein kinase domain profile. 220 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01669 540 SUPERFAMILY Protein kinase-like (PK-like) 202 505 IPR011009 -
Vian10g01669 540 SMART serkin_6 220 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01669 540 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 506 IPR044652 GO:0004672
Vian10g01669 540 ProSitePatterns Protein kinases ATP-binding region signature. 226 248 IPR017441 GO:0005524
Vian10g01669 540 Gene3D Transferase(Phosphotransferase) domain 1 297 501 - -
Vian10g01669 540 CDD STKc_IRAK 226 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01669 Vian-Chr10 27955612 27957734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01669 145 503 Receptor kinase-like Gene Family AT1G25390 57.222 1.26e-136 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian10g01669 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01669 - - var:108334729 1053.89