Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01658 ATGGATACAGGGCTGCAACTGATGTACCACAAAGGAGTGTCTATGCAAACTTTGCCTTTGGGTAATGGTCATGTTGACAATTGGGCTGATTCAGGCATAGTGGATAATAGCCAACAAACTGATGATACTTCCACAGATATTGATACTGATGATAGAATCCAATGCAATAGAGTTAAGAATGGCTCACGTATGCTTATGCAGTCCAAGGATCAGACAAAGGTCAAACCTGAAGATCAGAAGACCCTTCGTAGACTGGCTCAGAATCGAGAGGCTGCGAAGAAGAGTCGGTTAAGGAAAAAGGCATATGTACAGCAATTGGAGAACAGCCGAGTCAAGCTTGTTCAATTAGAGCAAGAACTTCAACGAGCACGTCAGCAGGGTATACTTATTGGGACTGAAGGGAATCAAGGTCATTTGGCTGTGGGAAATGGTGCCTTGGCATTTGACATGGAATATGCTCACTGGGTTGATGAACACCAACATTTGCTCAATGATCTAAGATTGGCTGTAAATTCTCAAATGAGTGATGATGAGTTACACATCCTTGTTGAAGGTGTCAGGGTACATTATAATGAGTTATTTACGTTAAAGAGAATAGGAGCAAAGGCTGATATATTTCACATACTTCATGGAACGTGGAAAACTCCAGTGGAAAGACGTTTTATGTGGCTTGGTGGATTCCGTTCGTCTGAACTGCTAAAGATCATCAAGGACCACCTTGAGCCATTGACAGAGCAGCAGTTGTTGGACATTTGTAATTTGCAAAAATCTTCTCTCCAGTCTGAGGATGCTTTAGAAAAAGGTATGGAAGCGTTGGAACAATATCTTGTGGAAACACTTTCCTCCACCTCCCTTGGACCCACTGGTAATGGAAATGTTGCTGATTACATGGACCAAATGGCTCTTGCAATGGCCAAGCTTGGTGAACTAGAAGGTCTCCTTCACCAGGCTGATCTCTTGAAGCAACATTATCTTCGACAGTTGCAACGAATTTTGACAGTACGCCAAACCGCCAGGGCATTCCTTGTCCAAAATGATTTCATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTGGCACGCCCTAGAGAATAA 1095 0.4274 MDTGLQLMYHKGVSMQTLPLGNGHVDNWADSGIVDNSQQTDDTSTDIDTDDRIQCNRVKNGSRMLMQSKDQTKVKPEDQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRVKLVQLEQELQRARQQGILIGTEGNQGHLAVGNGALAFDMEYAHWVDEHQHLLNDLRLAVNSQMSDDELHILVEGVRVHYNELFTLKRIGAKADIFHILHGTWKTPVERRFMWLGGFRSSELLKIIKDHLEPLTEQQLLDICNLQKSSLQSEDALEKGMEALEQYLVETLSSTSLGPTGNGNVADYMDQMALAMAKLGELEGLLHQADLLKQHYLRQLQRILTVRQTARAFLVQNDFISRLRALSSLWLARPRE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01658 364 SMART brlzneu 76 145 IPR004827 GO:0003700|GO:0006355
Vian10g01658 364 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 78 122 IPR004827 GO:0003700|GO:0006355
Vian10g01658 364 SUPERFAMILY Leucine zipper domain 80 123 IPR046347 GO:0003700|GO:0006355
Vian10g01658 364 Gene3D - 79 129 - -
Vian10g01658 364 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 83 98 IPR004827 GO:0003700|GO:0006355
Vian10g01658 364 Pfam bZIP transcription factor 79 119 IPR004827 GO:0003700|GO:0006355
Vian10g01658 364 FunFam BZIP family transcription factor 79 128 - -
Vian10g01658 364 Pfam Seed dormancy control 163 236 IPR025422 GO:0006351|GO:0043565
Vian10g01658 364 ProSiteProfiles DOG1 domain profile. 145 361 IPR025422 GO:0006351|GO:0043565
Vian10g01658 364 Coils Coil 99 126 - -
Vian10g01658 364 PANTHER TRANSCRIPTION FACTOR TGA9 28 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01658 Vian-Chr10 27835185 27838390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01658 1 364 bZIP Transcription Factor Family AT1G68640 60.163 1.08e-143 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian10g01658 DOG1 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01658 K14431 - gmx:100797393 553.518