Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01649 ATGGACTGCATGGATGAGAGTACCACCACTGAATCACTCTCCATCAGCCTTTCCCCCACCGTCTCATCCGAGGACAAGCTCCTTCTGCTTTCGTCCAACAATCCTTCTCCTCCGCCGCCCTCCACCACCTTGTGTCGCGTCGGCAGCGGCGCCAGCGCAATCGTAGATCCTGACGGCGGTGGAAACACCGAGGTCGAATCCAGGAAGCTTCCCTCGTCAAACAAGCGCAGCCGCGGAGTCGTACGGCGGCGCGGCGGAGCCGCCGCGGCCGGGAACGGTAACTCGATCGCTGGCGCGTGTTTTGTAAAGGCGCGTGAGCAGCTGTTCGAGAAGGCGGTTACCCCGAGCGACGTGGGGAAGCTGAATCGGTTGGTGATCCCGAAGCAACACGCGGAGAAGCACTTCCCGTTGCATAGCGCTAACGGCGTTAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGCGGGGAAAGTGTGGCGATTCCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGCTTTCACCGGTCCACCGGACCGGACAAGCAGCTCTACATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGTTGGGTTGTTCGGTCCGGTGGGACCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTTTGAAACTACCCGGTTCGGAGCCGAATGGTAACAATAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTGTTTTCGTTGGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAA 879 0.5552 MDCMDESTTTESLSISLSPTVSSEDKLLLLSSNNPSPPPPSTTLCRVGSGASAIVDPDGGGNTEVESRKLPSSNKRSRGVVRRRGGAAAAGNGNSIAGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLHSANGVSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNNVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSEPNGNNNASGTIPGFCNGKRREMELFSLECSKKPKIIGAL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01649 292 MobiDBLite consensus disorder prediction 1 90 - -
Vian10g01649 292 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 85 259 IPR044800 GO:0003700
Vian10g01649 292 SMART B3_2 109 217 IPR003340 GO:0003677
Vian10g01649 292 Gene3D - 100 224 IPR015300 -
Vian10g01649 292 SUPERFAMILY DNA-binding pseudobarrel domain 107 212 IPR015300 -
Vian10g01649 292 ProSiteProfiles B3 DNA-binding domain profile. 109 217 IPR003340 GO:0003677
Vian10g01649 292 CDD B3_DNA 108 202 IPR003340 GO:0003677
Vian10g01649 292 MobiDBLite consensus disorder prediction 1 32 - -
Vian10g01649 292 Pfam B3 DNA binding domain 109 214 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01649 Vian-Chr10 27671444 27672616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01649 3 81 B3 DNA Binding Superfamily AT1G25560 46.250 1.12e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian10g01649 B3 1.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01649 K09287 - gmx:100801107 354.755