Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian10g01649 | ATGGACTGCATGGATGAGAGTACCACCACTGAATCACTCTCCATCAGCCTTTCCCCCACCGTCTCATCCGAGGACAAGCTCCTTCTGCTTTCGTCCAACAATCCTTCTCCTCCGCCGCCCTCCACCACCTTGTGTCGCGTCGGCAGCGGCGCCAGCGCAATCGTAGATCCTGACGGCGGTGGAAACACCGAGGTCGAATCCAGGAAGCTTCCCTCGTCAAACAAGCGCAGCCGCGGAGTCGTACGGCGGCGCGGCGGAGCCGCCGCGGCCGGGAACGGTAACTCGATCGCTGGCGCGTGTTTTGTAAAGGCGCGTGAGCAGCTGTTCGAGAAGGCGGTTACCCCGAGCGACGTGGGGAAGCTGAATCGGTTGGTGATCCCGAAGCAACACGCGGAGAAGCACTTCCCGTTGCATAGCGCTAACGGCGTTAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGCGGGGAAAGTGTGGCGATTCCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGCTTTCACCGGTCCACCGGACCGGACAAGCAGCTCTACATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGTTGGGTTGTTCGGTCCGGTGGGACCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTTTGAAACTACCCGGTTCGGAGCCGAATGGTAACAATAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTGTTTTCGTTGGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAA | 879 | 0.5552 | MDCMDESTTTESLSISLSPTVSSEDKLLLLSSNNPSPPPPSTTLCRVGSGASAIVDPDGGGNTEVESRKLPSSNKRSRGVVRRRGGAAAAGNGNSIAGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLHSANGVSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNNVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSEPNGNNNASGTIPGFCNGKRREMELFSLECSKKPKIIGAL | 292 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian10g01649 | 292 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
Vian10g01649 | 292 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 85 | 259 | IPR044800 | GO:0003700 | |
Vian10g01649 | 292 | SMART | B3_2 | 109 | 217 | IPR003340 | GO:0003677 | |
Vian10g01649 | 292 | Gene3D | - | 100 | 224 | IPR015300 | - | |
Vian10g01649 | 292 | SUPERFAMILY | DNA-binding pseudobarrel domain | 107 | 212 | IPR015300 | - | |
Vian10g01649 | 292 | ProSiteProfiles | B3 DNA-binding domain profile. | 109 | 217 | IPR003340 | GO:0003677 | |
Vian10g01649 | 292 | CDD | B3_DNA | 108 | 202 | IPR003340 | GO:0003677 | |
Vian10g01649 | 292 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Vian10g01649 | 292 | Pfam | B3 DNA binding domain | 109 | 214 | IPR003340 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian10g01649 | Vian-Chr10 | 27671444 | 27672616 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian10g01649 | 3 | 81 | B3 DNA Binding Superfamily | AT1G25560 | 46.250 | 1.12e-06 | 47.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Vian10g01649 | B3 | 1.4e-28 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian10g01649 | K09287 | - | gmx:100801107 | 354.755 |