Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01646 ATGCTTCCCCGGAAAATGGGGTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGAAAAATTCAAGTTTTCCCTAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACGCAAGCAATTGAGGGGTGCAGGCAGCAATTGTCTGGAACGGTTACGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACGGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTATTAAGAAAGGAGCATCTCAAGATTCTGTTGAAGAAGAGGAAGAAGAAGAAAATGAAGATGAAGATGAGCAACATTCTCATCAGCACAGGAAAACCACTTCTGATAAAAAGAAATCAGATTGGCTTAGATCCGTTCAGTTGTGGAATTCCAATCCCCCTCCTACCAAAGAGGATGTGCCTAGAAAAGCAAATGTTGTTGAAGTAAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGCTATAGTTAACGGAAAGGCTGATAACTATGCATCAGCAATTGGTAAAACACCGTCTTCACCACCAGTTCCTGCTACAAGTTCCACAGGACCAATTACAATAGACAGCAGAAAAGAGGAGAAAGGACAGACTCAGAGAAAGCAACGACGATGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCCCTTCAGCAACTTGGTGGTGCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGCCACTTGCAGAAATTTCGTCTGCACACTAGAAGAAGTCCCATAATACACAACAACGGAAATTCACAAGCAGCACCTTTGTTTCTTGTGGGGAAAATTTTTGTGCAGCCACCAGAATATGGTGCAGTAGCTACCTCAACAGCTTCTGGAGGAGAATTGACCACAGTTACTGCTCCAACTGGAATATATGCACCTGTGGCTGCACATCCTCCACTTGTCACAAACACACCAATAATGAACCATTCACGTTCACAAGAAAGGCCTAATTATAATAATAATAATAGTGCTCAATCAAACTCACCTGCCTCATCATCTTCCACACACACAATCACAACTACTTAA 1110 0.436 MLPRKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLSGTVTEYNLNGQSECSEQTSTDEGPVFEEFIPIKKGASQDSVEEEEEEENEDEDEQHSHQHRKTTSDKKKSDWLRSVQLWNSNPPPTKEDVPRKANVVEVKRNGGAFQPFQREEKSAIVNGKADNYASAIGKTPSSPPVPATSSTGPITIDSRKEEKGQTQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNGNSQAAPLFLVGKIFVQPPEYGAVATSTASGGELTTVTAPTGIYAPVAAHPPLVTNTPIMNHSRSQERPNYNNNNSAQSNSPASSSSTHTITTT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01646 369 MobiDBLite consensus disorder prediction 176 196 - -
Vian10g01646 369 Gene3D - 209 267 - -
Vian10g01646 369 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Vian10g01646 369 MobiDBLite consensus disorder prediction 331 369 - -
Vian10g01646 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Vian10g01646 369 MobiDBLite consensus disorder prediction 197 213 - -
Vian10g01646 369 FunFam Myb family transcription factor 209 267 - -
Vian10g01646 369 MobiDBLite consensus disorder prediction 175 213 - -
Vian10g01646 369 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Vian10g01646 369 MobiDBLite consensus disorder prediction 330 369 - -
Vian10g01646 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 344 IPR044787 GO:0003700|GO:0006355
Vian10g01646 369 MobiDBLite consensus disorder prediction 60 118 - -
Vian10g01646 369 MobiDBLite consensus disorder prediction 101 118 - -
Vian10g01646 369 SUPERFAMILY Homeodomain-like 207 268 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01646 Vian-Chr10 27601861 27604000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01646 10 359 G2-like Transcription Factor Family AT1G68670 46.049 3.57e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian10g01646 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01646 - - gmx:100819750 546.584