Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01624 ATGACCAAACCCAACACGTTCTTTCACAATCTCATCAAGCCCTTCAAATTCAGTTCCAGTAAAGAGGAACATAGCGGAGACGATATACAAAACTTAGCTGCACAGGAGAATAAGGTCTTCTCTTACGAAACATTGGTCGCTGCTACAAACAAATTTAGCATTCTTAACAAGCTTGGTGAAGGGGGATTTGGACCCGTCTTTAAGGGGAAATTGAGTGACGGGAGAGAGATTGCAGTCAAGAGGTTATCGCGTAGATCGAATCAAGGGAAGACGCAGTTCATCAACGAGGCCAAGTTGTTGGGTCGTGTGCAGCACCGAAATGTGGTGAATCTGATCGGTTACTGCACCCATGCCTCCGAGAAGCTTCTTGTTTATGAGTATGTCCTTCACAAGAGCCTTGACAAGTTTCTCTTCAAAACGGGGAAGAAAGAAGAGCTAAACTGGAAACGTAGATTTGACATCATCAATGGGGTGGGAAGGGGTCTGCTTTATCTTCACGAAGATTCTCACAACTGCATAATCCATCGCGACATAAAGGCCAGTAACATCTTACTTGATGAAAAATGGGGTCCTAAGATAGCAGACTTTGGTCTCGCCAGACTCTTCCCCGAAGACCAAACCCACGTCAACACCCGTGTGGCTGGAACCAACGGGTATTTGGCACCAGAATATTTAATGTATGGCCATTTATCTGTGAAGGCAGACGTATTCAGCTATGGAGTTTTGTTGTTGGAATTGGTCACTGGCCGGAGAAATTCGTCGTTTGATGCCAACTCCAGTGCGCAGAATCTCCTCGACTGGGCATACTGGCTATACAAGAAGGGGAGGGCTTTGGAAATGGTGGACCCTGCATTGGGGTCTTCAGTGATAACTGAAGAAGTAGAAATGTGCATTAAACTGGGTCTGTTGTGCACTCAAGGTGATCCAAACCTTCGTCCAACCATGGGACGTGTGGTGGTGATGCTGTCAAAGAAACCGAACCACATGGAAGAACCAACAAGACCAGGAATGGCTGGTTCCAGATTCAGAAGAGTGTCTCACAGACCCTCTGCAATGTTTTCTTCTGGGGTTGATGATGACTCTCATTCACACACTGACACTGGTGATTCAAGCAACTATGCCACTAATAATAATACTACTTCTGTAACATCAACAACACCAAGCTCCAGTGCAACTGCAGAAGTAGACCCCCGAGGGAAACGACCGATGCAAGGTTAG 1218 0.4622 MTKPNTFFHNLIKPFKFSSSKEEHSGDDIQNLAAQENKVFSYETLVAATNKFSILNKLGEGGFGPVFKGKLSDGREIAVKRLSRRSNQGKTQFINEAKLLGRVQHRNVVNLIGYCTHASEKLLVYEYVLHKSLDKFLFKTGKKEELNWKRRFDIINGVGRGLLYLHEDSHNCIIHRDIKASNILLDEKWGPKIADFGLARLFPEDQTHVNTRVAGTNGYLAPEYLMYGHLSVKADVFSYGVLLLELVTGRRNSSFDANSSAQNLLDWAYWLYKKGRALEMVDPALGSSVITEEVEMCIKLGLLCTQGDPNLRPTMGRVVVMLSKKPNHMEEPTRPGMAGSRFRRVSHRPSAMFSSGVDDDSHSHTDTGDSSNYATNNNTTSVTSTTPSSSATAEVDPRGKRPMQG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01624 405 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01624 405 MobiDBLite consensus disorder prediction 367 393 - -
Vian10g01624 405 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01624 405 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Vian10g01624 405 SUPERFAMILY Protein kinase-like (PK-like) 37 339 IPR011009 -
Vian10g01624 405 MobiDBLite consensus disorder prediction 351 405 - -
Vian10g01624 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vian10g01624 405 CDD STKc_IRAK 58 324 - -
Vian10g01624 405 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 383 - -
Vian10g01624 405 Gene3D Transferase(Phosphotransferase) domain 1 129 336 - -
Vian10g01624 405 Gene3D Phosphorylase Kinase; domain 1 15 127 - -
Vian10g01624 405 FunFam Cysteine-rich receptor-like protein kinase 2 128 330 - -
Vian10g01624 405 Pfam Protein kinase domain 53 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01624 Vian-Chr10 27267692 27272068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01624 40 338 Receptor kinase-like Gene Family AT4G11530 52.159 5.60e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian10g01624 Pkinase 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01624 - - gmx:100811523 622.468