Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01606 ATGGAGGGCAGAACAAGCTCTGTGCTCCCACCTGGCTTCAGGTTTCACCCCACTGATGAGGAACTAATCGTGTACTACCTTTCTAACCAAGCCACATCAAAACCATGCCCTGCATCAATAATTCCAGAAGTTGATATCTATAAGTTTGATCCGTGGGAATTACCTGAGAAAACAGACTTTGGAGAGAATGAATGGTACTTCTTTACCCCAAGGGAGAGGAAGTACCCAAATGGGGTGAGGCCTAATAGAGCAACTGTGTCTGGGTACTGGAAGGCCACTGGTACTGATAAAGCAATCTACAGTGGCTCTAAGCATATTGGGGTCAAGAAAGCTTTGGTCTTTTACAGGGGTAAGCCACCAAAGGGTATCAAGACAGATTGGATCATGCATGAGTACAGATTAATAGGATCAAGAAGACAAACCAATAGACAAATTGGATCCATGAGGCTAGATGACTGGGTCTTGTGTAGGATCTACAAGAAGAAGAACATGGGAAAATCATTGGAGGCAAAAGAGGACTACCCAATAGCACAAATCAATCTCATACCACCAAATAATGAGACTCAACAAGAAGTGATGAAATTTCCAAGGACTAGTTCCCTTACTCATCTTTTGGATATGGATTACTTAGGTCCAATATCACACATACTATCTGATGCATCATACACTTCAACCTTTGATTTTCAACTTAACACTGCCAATGGTGGAATAGACCCCTTCATAAAGCCACAGCCACTTGAAATTCCTAATAGCCTTTATGCAGCAGATTCAGGGAAGTACCAAGTGAAACAGAACTGCACCATCAACCCCACCATATTTGTAAACCATGTCTATGATCAGAGAGGATAA 849 0.4217 MEGRTSSVLPPGFRFHPTDEELIVYYLSNQATSKPCPASIIPEVDIYKFDPWELPEKTDFGENEWYFFTPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKALVFYRGKPPKGIKTDWIMHEYRLIGSRRQTNRQIGSMRLDDWVLCRIYKKKNMGKSLEAKEDYPIAQINLIPPNNETQQEVMKFPRTSSLTHLLDMDYLGPISHILSDASYTSTFDFQLNTANGGIDPFIKPQPLEIPNSLYAADSGKYQVKQNCTINPTIFVNHVYDQRG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01606 282 FunFam NAC transcription factor 18 165 - -
Vian10g01606 282 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Vian10g01606 282 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Vian10g01606 282 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Vian10g01606 282 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 185 - -
Vian10g01606 282 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01606 Vian-Chr10 27032200 27033342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01606 1 216 NAC Transcription Factor Family AT1G69490 67.982 2.59e-115 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian10g01606 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01606 - - gmx:100170717 532.717