Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01601 ATGAAGTCCAGAAGAAGACAGGAAGCTCCTCGACTACGTTCGGAAGCATGGTCATGGAAACTGGCGTACAGTGCCTGCCAAAGCGGATTGAGGTGGATTAACTATCTCAAACCTGATATCAAAAGAGGAAACTTCAGCGCCGAGGAAGACCACTCAATCATTCAACTTCATGCTCTTCTTGGAAACAGATGGTCAATCATAGCAGCTCACCTGCCCCAAAGAACAGACAATGAGATCAAGAACTATTGGAAAACCAACATCAAGAAAAGACTCATCAGAATGGGCTTAGATCCCATTACCCACAAAACAATTAAGCAGAACACGTTTGAACCCTTTGGTGGTGGCCATGACCAGTCCAAGGACACCACCAATATCAGCCACGTGGCTCAATGGGAGGGTACTCGACTTGAAGCTGAAGCCAGAGGATCTCAGTTGCAAGCTGGATCCGGATCTTCGCAACTCTCTGGGCTAATTTTAAGCAAAATTCCAACTCAACCTTGTCTTTCATCACATTCGGTGTCAACCGAAAACAACACAGCGTATAACATGTATGCCCTCGTGCTTGCCACAACTCATGATTTTCGTTCAGCTATGTCCACTCTGAGCATTCCCACGCTTCCCGCAGTTTCTAATATTCCACAAATGAAGAACACAGAAAGTTTACTTTCATATAAGGGTGATAATAATGTCATGGGAGCTAGTAGCCAAATCAAAAAGGTAATGGAAGGTTGTGTATCAAACTTACAAGATGATGACATTATGGTGGCTGTGGAAGCGTTTAGAACAGAAAGGTCTGAGAGTATCGAAGAGCTGTTTAATGAACCCACTTCCATTTAG 837 0.4409 MKSRRRQEAPRLRSEAWSWKLAYSACQSGLRWINYLKPDIKRGNFSAEEDHSIIQLHALLGNRWSIIAAHLPQRTDNEIKNYWKTNIKKRLIRMGLDPITHKTIKQNTFEPFGGGHDQSKDTTNISHVAQWEGTRLEAEARGSQLQAGSGSSQLSGLILSKIPTQPCLSSHSVSTENNTAYNMYALVLATTHDFRSAMSTLSIPTLPAVSNIPQMKNTESLLSYKGDNNVMGASSQIKKVMEGCVSNLQDDDIMVAVEAFRTERSESIEELFNEPTSI 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01601 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 29 210 - -
Vian10g01601 278 FunFam MYB transcription factor 43 104 - -
Vian10g01601 278 Pfam Myb-like DNA-binding domain 42 85 IPR001005 -
Vian10g01601 278 Gene3D - 44 110 - -
Vian10g01601 278 SMART sant 41 89 IPR001005 -
Vian10g01601 278 CDD SANT 44 87 IPR001005 -
Vian10g01601 278 SUPERFAMILY Homeodomain-like 27 95 IPR009057 -
Vian10g01601 278 ProSiteProfiles Myb-like domain profile. 37 87 IPR001005 -
Vian10g01601 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 91 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01601 Vian-Chr10 26960268 26961355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01601 30 141 MYB Transcription Factor Family AT3G01140 66.071 1.49e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian10g01601 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01601 K09422 - gmx:100790887 343.969