Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01596 ATGGGAAGGCCACCATGCTGTGAGAAGACAGGCCTCAAGAAAGGACCATGGACACCAGAAGAAGACCAAAAGCTCATTGCTTTCATTGAAAACCATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGGCTTAGAAGATGTGGAAAGAGTTGCAGACTTAGGTGGACTAATTATCTGAGACCTGATATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAACAAACCATTATTCAACTTCATGCTCTTCTGGGAAACAGATGGTCAGCCATAGCATCTCACTTGCCGAAGAGAACTGACAATGAGATCAAGAACTATTGGAACACCCATCTCAAGAAAAGGCTCGACAAAATGGGCATCGACCCGACCACCCACAAGCCAAAAATGGAGTCCCTCATCCACTTCAAAGACGGTTCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTCGAAGCCGAAGCCAGACTCGTACGAGAATCCAAGTTGCAGGAACAAAACAACATCGTATTAACCTCTTCCTCACCACCACCACCACAACCTAGACTCATTCTCAACAAAATCACACCCCAACACCACCACCAACCCTCACTACCACCGTGCCTCGACGTCCTCAAAGCATGGCAAAGTTCATGCTCAGAAAATAAAAACAACAACCAGAAATACTCATCAGTACACGACAAGAAGAAAACCATGCATGTGCATAGCATGTATGCCATGATGCTTGCCACTGATGACCTTGAATCCCCAACATCCACCTTGTGTTTCCCTGAGAGTATGCAAATGAATAATAGTAACAATAATAATAGCAATAGCATTATGGTGTCGACCAACCAAGTTGGGTTAATCAATGAGAACTATTTACTCCCTCCAACTGCTGTGGAAGAGTTTATGACGGTAGCAACGGTGAAGGAAGATGCTTGTTGTGGCGGTGATGGTGACAGAAGTGAGTCGTGGAGGTACTTCACCAAACGCAACAGTGATCGTGATGAAGAATTAGCTGAAACTGCGAAGAGAATTATGTACCAGACGATGCCATGTTTGCAAGATGATGACATAATGGTGGCTGTTGATGCATTAAGAGGTGGTGGATATTATGGTAATAATGATGATACTATTAATAATGATGTGGTGGCATTTACACCTCTCTCTAGCAATGTCAATATGGTTGTTGGTTTCAATAACGACGTCCAGGATTTTGATTCCAACCAAGATTTAGCGACGGAGAACTTGGAAGTGCACTTCGAGGAGAATAAGGATTATTGGAATAGCGTGCTTGCTTATAAGTGA 1296 0.4444 MGRPPCCEKTGLKKGPWTPEEDQKLIAFIENHGHGSWRALPAKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDKMGIDPTTHKPKMESLIHFKDGSNLSHMAQWESARLEAEARLVRESKLQEQNNIVLTSSSPPPPQPRLILNKITPQHHHQPSLPPCLDVLKAWQSSCSENKNNNQKYSSVHDKKKTMHVHSMYAMMLATDDLESPTSTLCFPESMQMNNSNNNNSNSIMVSTNQVGLINENYLLPPTAVEEFMTVATVKEDACCGGDGDRSESWRYFTKRNSDRDEELAETAKRIMYQTMPCLQDDDIMVAVDALRGGGYYGNNDDTINNDVVAFTPLSSNVNMVVGFNNDVQDFDSNQDLATENLEVHFEENKDYWNSVLAYK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01596 431 CDD SANT 69 112 IPR001005 -
Vian10g01596 431 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 268 - -
Vian10g01596 431 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vian10g01596 431 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian10g01596 431 CDD SANT 16 61 IPR001005 -
Vian10g01596 431 SMART sant 66 114 IPR001005 -
Vian10g01596 431 SMART sant 13 63 IPR001005 -
Vian10g01596 431 FunFam MYB transcription factor 69 116 - -
Vian10g01596 431 Gene3D - 69 134 - -
Vian10g01596 431 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian10g01596 431 Gene3D - 13 66 - -
Vian10g01596 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian10g01596 431 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian10g01596 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian10g01596 431 FunFam MYB-related transcription factor 13 66 - -
Vian10g01596 431 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01596 Vian-Chr10 26872854 26875958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01596 1 179 MYB Transcription Factor Family AT3G01140 78.075 7.92e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian10g01596 Myb_DNA-binding 7.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01596 K09422 - gmx:100792994 625.55