Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01579 ATGGCGGGCGGCGGAAGTGGGGACCGACCACCGTGGAAAGAGTCGGCGCCACCTCGACCCACCATCAGTCTCCCTCCAAGAGCTGCTTCCATGGAGACCCTTTTCAATGGCGGCTTCAGTCCTGGTCCCATGACTCTTCTCTCTGGCTTTTTGACTGATGGGGATGACAGCAGCAAGTCCTTCTCTCAGCTCCTCGCCGGAGCCATGTTTTCTCCGGTGGCCTCCACCGCCGTGCACGACTCGCATGGCCTCTTTTCACCTTCCCAGATGTCATTTGGAATGACACACCAGCAGGCACTGGCCCAAGTTTCAGTGCAGGCTTCACAAGCTAACTCAAACATGCATATTCAGGCTGAACATTCATTGCCTGTATCAGTATCATCACCTACCTCATTTACACAGGTTCCTGCAGCTACTTCCAATGCTACACAACCGCTGATTCCACCCTTAACTGCAAATTCTTGGGCGACAATGACAGAATCCACTGATCATTCTCACTCTGAACAAAAGTTGCAATCTTCATCACTAAATGTTGATAAGCCTGCAGATGATGGATACAACTGGAGGAAGTATGGACAGAAACAGGTGAAGGGTAGTGAATTTCCTCGAAGTTATTACAAATGCACACATCCACATTGTCCTGTCAAGAAAAAAGTTGAGCGTTCACTTGAGGGTCATGTTACTGCAATTATTTATAAAGGAGAACACAATCATCAACGTCCTCATCCTAACAAACGCTCAAAAGATTCTGTGCCTTCAAATGAACATTCAAATATGCAAGGGAATGCTTCTGCTTATCAAGGGATGACTAAAATGGATCCAGAGTCAAGTCAGGCAACAACTGATCATCTATCAGGAAGTGACAGTGAGGAAGTAGGTGATCATGAAGCTGAAGATGATGAGAAAAATGTTGAGCCTGACCCAAAGAGGAGTAAAACAGAAGCCACAAATTTGGATCCTGCATCTTCACATAGGACAGTCACTGAGCCTAGAATCATTGTGCAAACAACCAGTGAAGTTGATCTTTTAGATGATGGTTACAGATGGCGAAAATATGGGCAGAAAGTTGTCAAAGGAAACCCTTATCCGAGGAGCTATTACAAATGTACAACACCAGGTTGTAAAGTCCGAAAGCATGTTGAGAGGGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGAAAACACAATCATGATGTTCCAGCTGCTAAGACCAGCAGCCATGTTATGGCAAGTAACAACACTGCACAGATAAAATCACAGAATTCCAATCATGGAAAACAAAGTTTTGGCAACAGAGATATTGGAGGCAATGAGCAACAGCCGGTTGCACGGCTAAGGTTGAAGGAAGAGCAGATAACCTAG 1371 0.4544 MAGGGSGDRPPWKESAPPRPTISLPPRAASMETLFNGGFSPGPMTLLSGFLTDGDDSSKSFSQLLAGAMFSPVASTAVHDSHGLFSPSQMSFGMTHQQALAQVSVQASQANSNMHIQAEHSLPVSVSSPTSFTQVPAATSNATQPLIPPLTANSWATMTESTDHSHSEQKLQSSSLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPHCPVKKKVERSLEGHVTAIIYKGEHNHQRPHPNKRSKDSVPSNEHSNMQGNASAYQGMTKMDPESSQATTDHLSGSDSEEVGDHEAEDDEKNVEPDPKRSKTEATNLDPASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCKVRKHVERASTDPKAVITTYEGKHNHDVPAAKTSSHVMASNNTAQIKSQNSNHGKQSFGNRDIGGNEQQPVARLRLKEEQIT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01579 456 MobiDBLite consensus disorder prediction 315 329 - -
Vian10g01579 456 MobiDBLite consensus disorder prediction 253 286 - -
Vian10g01579 456 MobiDBLite consensus disorder prediction 419 438 - -
Vian10g01579 456 Gene3D WRKY domain 165 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 Gene3D WRKY domain 328 404 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 MobiDBLite consensus disorder prediction 158 180 - -
Vian10g01579 456 MobiDBLite consensus disorder prediction 1 29 - -
Vian10g01579 456 SUPERFAMILY WRKY DNA-binding domain 335 403 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 ProSiteProfiles WRKY domain profile. 338 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 Pfam WRKY DNA -binding domain 183 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 Pfam WRKY DNA -binding domain 344 400 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 MobiDBLite consensus disorder prediction 233 252 - -
Vian10g01579 456 SUPERFAMILY WRKY DNA-binding domain 180 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 427 IPR044810 GO:0003700
Vian10g01579 456 FunFam WRKY transcription factor 33 330 396 - -
Vian10g01579 456 MobiDBLite consensus disorder prediction 158 183 - -
Vian10g01579 456 MobiDBLite consensus disorder prediction 419 456 - -
Vian10g01579 456 SMART WRKY_cls 182 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 SMART WRKY_cls 343 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 MobiDBLite consensus disorder prediction 233 329 - -
Vian10g01579 456 ProSiteProfiles WRKY domain profile. 183 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g01579 456 FunFam WRKY transcription factor 167 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01579 Vian-Chr10 26675640 26679867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01579 19 65 WRKY Transcription Factor Family AT2G03340 63.265 4.88e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian10g01579 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01579 - - gmx:100127369 738.413