Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01577 ATGTCGGACGAGGAACACCACTTTGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATATCCCCAACAAGCTGGAACTATCCGCAAAAATGGATACATTGTAATCAAGAACAGGCCATGCAAGGTTGTGGAAGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGGAATTGACATCTTCACAGGCAAAAAGCTTGAGGATATTGTGCCATCTTCCCATAACTGTGATGTATACATGAGTGTTCCTCATGTCAATCGCACTGACTACCAGCTCATTGATATATCAGAGGATGGATTTGTAAGTCTGCTGACTGACAGTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAGTCTGCTTACGCAGGTTATTGTTTGA 402 0.4378 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVYMSVPHVNRTDYQLIDISEDGFVSLLTDSGGTKDDLRLPTDESLLTQVIV 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01577 133 Gene3D - 90 132 IPR012340 -
Vian10g01577 133 MobiDBLite consensus disorder prediction 1 21 - -
Vian10g01577 133 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian10g01577 133 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 89 131 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian10g01577 133 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 131 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vian10g01577 133 Gene3D - 1 84 IPR014722 -
Vian10g01577 133 SUPERFAMILY Translation proteins SH3-like domain 15 97 IPR008991 -
Vian10g01577 133 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Vian10g01577 133 SUPERFAMILY Nucleic acid-binding proteins 90 131 IPR012340 -
Vian10g01577 133 PIRSF Transl_init_eIF5A 1 132 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vian10g01577 133 SMART eIF_5a_2 89 132 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vian10g01577 133 NCBIfam translation initiation factor IF-5A 17 124 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01577 Vian-Chr10 26646701 26647853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01577 1 131 Eukaryotic Initiation Factors Gene Family AT1G13950 87.023 3.34e-81 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01577 K03263 - tcc:18604761 252.292