Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian10g01572 | ATGACGACGAGAGTGATTATGAGAAGACAGCCCCCGCGACGATGCTCGACCAATAACACGACCAATAACACGGTGACGATAGTGAGGAATGTGCAACATGGGGAGTGTCAGAGGAATCACGCGATCAATGTCGGAGGATTTGCTGTGGATGGTTGCATGGAGTTCTTTCCGAGTGGAGCAGAAGGAAGTGCTAGGGCTCTGATTTGTGATGCATGTGGTTGCCACAAGAATTTCCATCGGAGGGAGACACATATATATATTACTTGTCACTGCACTTCTGCCAGTAAATAA | 291 | 0.4777 | MTTRVIMRRQPPRRCSTNNTTNNTVTIVRNVQHGECQRNHAINVGGFAVDGCMEFFPSGAEGSARALICDACGCHKNFHRRETHIYITCHCTSASK | 96 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian10g01572 | 96 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 34 | 82 | IPR006456 | - | |
Vian10g01572 | 96 | Pfam | ZF-HD protein dimerisation region | 31 | 83 | IPR006456 | - | |
Vian10g01572 | 96 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 33 | 82 | IPR006456 | - | |
Vian10g01572 | 96 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 19 | 83 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian10g01572 | Vian-Chr10 | 26575235 | 26575525 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian10g01572 | 4 | 93 | Zinc finger-homeobox gene family | AT3G28917 | 51.648 | 2.22e-24 | 86.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Vian10g01572 | ZF-HD_dimer | 1.4e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian10g01572 | - | - | vra:106758454 | 165.236 |