Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01572 ATGACGACGAGAGTGATTATGAGAAGACAGCCCCCGCGACGATGCTCGACCAATAACACGACCAATAACACGGTGACGATAGTGAGGAATGTGCAACATGGGGAGTGTCAGAGGAATCACGCGATCAATGTCGGAGGATTTGCTGTGGATGGTTGCATGGAGTTCTTTCCGAGTGGAGCAGAAGGAAGTGCTAGGGCTCTGATTTGTGATGCATGTGGTTGCCACAAGAATTTCCATCGGAGGGAGACACATATATATATTACTTGTCACTGCACTTCTGCCAGTAAATAA 291 0.4777 MTTRVIMRRQPPRRCSTNNTTNNTVTIVRNVQHGECQRNHAINVGGFAVDGCMEFFPSGAEGSARALICDACGCHKNFHRRETHIYITCHCTSASK 96
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01572 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 34 82 IPR006456 -
Vian10g01572 96 Pfam ZF-HD protein dimerisation region 31 83 IPR006456 -
Vian10g01572 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 33 82 IPR006456 -
Vian10g01572 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 83 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian10g01572 Vian-Chr10 26575235 26575525 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01572 4 93 Zinc finger-homeobox gene family AT3G28917 51.648 2.22e-24 86.7
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian10g01572 ZF-HD_dimer 1.4e-25 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01572 - - vra:106758454 165.236