Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01568 ATGGCGACGACAGCGGAGCCAGAAGCGAAGACCTACTGGTGTCACGAATGCGATATGAGCGTGTCCCTCACACTCCTTCCCTCGCCTCTCCTCTGTTCCCATTGCCACACCTCCTTCCTCGAACTAATTGACTCTCCCTTCTCCCAAAATGATGCCGAATCACCCCTCTTTGACCTCATTTTACAGGACGCGCTCTTACTCATCTCCCCGAAGCCCCTCCCCACCAAACGCCACCCTTTCCCCTCCGTCAACGTCACACCCTCGGTCCTTTTCACGCTCGACCCCAACGACTTCGTTTTCTTCGCTACCAAATTTCCCTCTTTGACGCCGAGGCCAAATAGTTGCCTTGCAAACACCTTTACCATGCTGGTTGCATCACGCCGTGACTCGACCTCCACGCGTCGTGCCCGTTGTGCAGACTTCGCCTTGAGGAAGAGGCGGCACAGGAGGAGGAAGACGAAGGAGAATCTGAAAGGTCTCATACTGGCTTTGGTGTCAAGTGGGTTCATTACGGCAAGTTTCATCATTAAGAAGCAAGGTCTCAGAAGAGCTGCAGCAGCTTCTGGTGTCAGGGCTGTGATCAGAAGATCTTTGTTTCGGCAGGAGGATACCATAATATTCCATCTCTTGGAGAGAGCTAAATATTCTCAGGATTCCGTTGAATATGAAAATAATGATGATTTAAAAGGATCTATTATTGTTAAGAAATTGGTCTTGCAAGATGAAATGCTCCATAATCAGGTTCTGCATCCCTGTGCTCATTCCATCAATATAAATAAAAAGATTTGGAATACATATTTTGAGAAAATCCTCCCAGAATTGGTAAAAGCAAGAAATGATGATGAGAGTATCATAGAATTGGTACAAGAAAGAAATGATGATGACTCTGGATCTATTGCTGATTGTGACTCTCTTTGCTTACAGGACAGGGAACTACTGTTGGAGTTGCTGACAGATAAAACTGAGGAGGCGATAGTGAAGAAGAGAGTAGAACTGAAGGCCACAATATTTGGCCAAGTGGTGCAGATTGATGAAGCATACAATGTAGTCAATCCTACTTATAAAATCAAGCCAAGTTTTATTGTAGAACTCTTTGAAAACAATATTATACCTCTTAGTAAAGAGGTGCAAGTGGAGTACCTGTTAAGAAGACTTGACTAA 1161 0.4505 MATTAEPEAKTYWCHECDMSVSLTLLPSPLLCSHCHTSFLELIDSPFSQNDAESPLFDLILQDALLLISPKPLPTKRHPFPSVNVTPSVLFTLDPNDFVFFATKFPSLTPRPNSCLANTFTMLVASRRDSTSTRRARCADFALRKRRHRRRKTKENLKGLILALVSSGFITASFIIKKQGLRRAAAASGVRAVIRRSLFRQEDTIIFHLLERAKYSQDSVEYENNDDLKGSIIVKKLVLQDEMLHNQVLHPCAHSININKKIWNTYFEKILPELVKARNDDESIIELVQERNDDDSGSIADCDSLCLQDRELLLELLTDKTEEAIVKKRVELKATIFGQVVQIDEAYNVVNPTYKIKPSFIVELFENNIIPLSKEVQVEYLLRRLD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01568 386 ProSiteProfiles Chorismate mutase domain profile. 182 386 IPR008238 GO:0004106|GO:0009073
Vian10g01568 386 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 309 386 IPR037039 GO:0004106|GO:0009073
Vian10g01568 386 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 246 308 IPR037039 GO:0004106|GO:0009073
Vian10g01568 386 PANTHER CHORISMATE MUTASE 308 386 IPR008238 GO:0004106|GO:0009073
Vian10g01568 386 SUPERFAMILY Chorismate mutase II 194 386 IPR036263 GO:0046417
Vian10g01568 386 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 190 245 IPR037039 GO:0004106|GO:0009073
Vian10g01568 386 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01568 Vian-Chr10 26522977 26527896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01568 5 63 C3H Transcription Factor Family AT3G60080 43.077 1.48e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01568 K01850 - var:108334941 195.282