Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01548 ATGACGACGAGAGTGACGAGAGTGATTATGAGAAGACAGCCCCCGCGACAATGCTCGACCAATAACACGACGTTAGAGAGGAGGACTGTGCAACATGGGGAGTGTCAGAGGAATCACGCGATCAATGTCGGAGGATTTGTTGTGGATGGTTGCATGGAGTTCTTTCCGAGTGGAGCAGAAGGAACTGTTGGGGCTCTGATTTGTGACACATGTGGTTGCCACAAGAATTTCCATCAGAGGGAGACACATATATATATTACTTGTCACTGCACTTCTGACAGTGGATATCATGTTTTCCGTTAG 303 0.4752 MTTRVTRVIMRRQPPRQCSTNNTTLERRTVQHGECQRNHAINVGGFVVDGCMEFFPSGAEGTVGALICDTCGCHKNFHQRETHIYITCHCTSDSGYHVFR 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01548 100 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 33 81 IPR006456 -
Vian10g01548 100 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 19 83 - -
Vian10g01548 100 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 32 81 IPR006456 -
Vian10g01548 100 Pfam ZF-HD protein dimerisation region 30 82 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01548 Vian-Chr10 26308197 26308499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01548 25 92 Zinc finger-homeobox gene family AT3G28917 57.971 6.53e-24 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian10g01548 ZF-HD_dimer 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01548 - - vra:106758454 160.614