Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01546 ATGGAAGACAAGGACAGAGCAACCTCCGATCCCGCCGCGGTTGAGTTTGCCGGCGACACGAGTTGGACATTCGCCACAGATGGCTCAGACGCTGCCTACTTGTTCTCCGGCTACGGAGAGCGAAGCGTACTCAGGGAATTCGGGTGGAACCTCGAACCGGACCAGTTGAACCGGATCGGCACCGACGATGGATTGTGGATGCCGGTTCAATCCTCTCTGACCTGTTCGATTGAACCGGCCGCTGCTGCATCGTTGCGGTCGAATAACCAGTCGGTGTCGTCGAGCTCCAGTGAGGATCAGCCGGAGAAATCCACCGTCTCTGATGAGAAACCACCTGAGACACCGATTGATGATGGACAGAAATACAAAATCTGTTCCTGGTTTAGGATTAAAGGTAAAAAGAAGGGGCAAAAGCGAATACGGCTGCCACGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGCCCATTCCCTAGGAGCTACTACCGCTGCACAAACAGCAAATGCACGGTGAAGAAGAGGGTTGAACGCTCTTCCGAGGACCCAACGATTGTGATTACCACATATGAAGGTCAACACTGTCATCACACCGTTGGATTTCCTCGAGGGGGAATCATTTGTCACGAGGCTGCTGCCTTTGCGGGCCAGTTGGCTCCTATGTCACAGTTTTATTATCCAATTCATTCACCCAGAGAGACTAATAATATAAATACTCTCAGCTCCATTTCTCCGCCATGCCAAGCACAGGATGATGCATCTGGGGGATCCAACACTGTAATGCCAGCTGATGCGTCGTCACTGCAGCCTCCCACTGATGAAGGGTTGCTTGGAGATATTGTACCTCCGGGAATGCGTATCAGATGA 918 0.5109 MEDKDRATSDPAAVEFAGDTSWTFATDGSDAAYLFSGYGERSVLREFGWNLEPDQLNRIGTDDGLWMPVQSSLTCSIEPAAAASLRSNNQSVSSSSSEDQPEKSTVSDEKPPETPIDDGQKYKICSWFRIKGKKKGQKRIRLPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGIICHEAAAFAGQLAPMSQFYYPIHSPRETNNINTLSSISPPCQAQDDASGGSNTVMPADASSLQPPTDEGLLGDIVPPGMRIR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01546 305 SUPERFAMILY WRKY DNA-binding domain 148 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g01546 305 MobiDBLite consensus disorder prediction 85 101 - -
Vian10g01546 305 MobiDBLite consensus disorder prediction 255 305 - -
Vian10g01546 305 Gene3D WRKY domain 143 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian10g01546 305 SMART WRKY_cls 156 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g01546 305 Pfam WRKY DNA -binding domain 157 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g01546 305 MobiDBLite consensus disorder prediction 255 283 - -
Vian10g01546 305 FunFam WRKY transcription factor 57 142 216 - -
Vian10g01546 305 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 88 246 IPR044810 GO:0003700
Vian10g01546 305 ProSiteProfiles WRKY domain profile. 151 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian10g01546 305 MobiDBLite consensus disorder prediction 102 117 - -
Vian10g01546 305 MobiDBLite consensus disorder prediction 85 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01546 Vian-Chr10 26247921 26251262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01546 9 303 WRKY Transcription Factor Family AT1G69310 44.582 3.60e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian10g01546 WRKY 2e-25 CL0274